RPSBLAST alignment of GI: 254780222 and protein with PDBid: 2q2e

>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621
 Score =  200 bits (509), Expect = 8e-52
 Identities = 75/633 (11%), Positives = 154/633 (24%), Gaps = 87/633 (13%)

Query: 46  ASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI-AGYANLIEVSL--- 101
           A   + +   E       +    +  ++L     E +DNA+D    AG    I V +   
Sbjct: 10  AKKQKSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERT 69

Query: 102 -DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
                 + + DNG GI  E  PK         +   L  G +F     + S G  G+GIS
Sbjct: 70  GPDYVTVIIEDNGPGIVREQIPK---------VFAKLLYGSRFHA--LKQSRGQQGIGIS 118

Query: 161 VVNALS-----DELHVTVARQNTIFSQKFSRGIPLS---PLEKKEKVRNKRGTRITFRPD 212
                +         +      T  +  +   I  S   P    ++VR+      T    
Sbjct: 119 AAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIEL 178

Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
                         + +  ++ A ++   +                E+        +   
Sbjct: 179 EMRA-AYVKGRRQSIYEYLKATAIVNPHAR-------ITLIDPDGNEEVFERATDKMPEP 230

Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
            +  L +   I               +               +  +        G     
Sbjct: 231 AEEILPHPEGIELGTLMKMLHYTERQK---------------LAPFLRYSFCKIGLLTA- 274

Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
                    I K A L       ++   +          V I  P       + +     
Sbjct: 275 -------EEICKAAGLDPEIDPHALGRHEARKLIEAFEKVKIMAPP--TDCLSPIGEDLI 325

Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLRLPG 451
            R +E      F     + P   +     V           K+ +++  + A R   L  
Sbjct: 326 YRGLEKETTVDFIATSTRKPAVYSGNPFVVEVGMAYGGNLPKEEKISIMRFANRVPLLYQ 385

Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
           +    + +     +      +  GG            V  +     +      + I +  
Sbjct: 386 QGGCVTTHAVEDIKWKQYGLNQPGGGIPVGPVILLIHVASINVPFTSE---SKDAIADIP 442

Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
            I + +         +   +   Y           +   I + +L     ++  ++E+  
Sbjct: 443 VIKEEIDLAIK----EVARKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAHVLEKDV 498

Query: 572 LFLISPPLFRITQG-----------------TKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
              I+P + +I                       V           + E           
Sbjct: 499 PD-INPVVAKIMGNLLVHRVIKNNGDGTVDVAIKVKNFGTSAYSFRVHEMLP--CKVSGA 555

Query: 615 SRFKGLGEMLASQLK--ETAMDANKRTLLRVEI 645
                +  M        + +  A    +L  +I
Sbjct: 556 KPEPKVVTMGNDYDYVWDISASAGSSKVLSYKI 588