RPSBLAST alignment of GI: 254780222 and protein with PDBid: 2q2e
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621
Score = 200 bits (509), Expect = 8e-52
Identities = 75/633 (11%), Positives = 154/633 (24%), Gaps = 87/633 (13%)
Query: 46 ASSIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI-AGYANLIEVSL--- 101
A + + E + + ++L E +DNA+D AG I V +
Sbjct: 10 AKKQKSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERT 69
Query: 102 -DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGIS 160
+ + DNG GI E PK + L G +F + S G G+GIS
Sbjct: 70 GPDYVTVIIEDNGPGIVREQIPK---------VFAKLLYGSRFHA--LKQSRGQQGIGIS 118
Query: 161 VVNALS-----DELHVTVARQNTIFSQKFSRGIPLS---PLEKKEKVRNKRGTRITFRPD 212
+ + T + + I S P ++VR+ T
Sbjct: 119 AAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIEL 178
Query: 213 PKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTY 272
+ + ++ A ++ + E+ +
Sbjct: 179 EMRA-AYVKGRRQSIYEYLKATAIVNPHAR-------ITLIDPDGNEEVFERATDKMPEP 230
Query: 273 LQTKLENRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHES 332
+ L + I + + + G
Sbjct: 231 AEEILPHPEGIELGTLMKMLHYTERQK---------------LAPFLRYSFCKIGLLTA- 274
Query: 333 GLRVALTRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDA 392
I K A L ++ + V I P + +
Sbjct: 275 -------EEICKAAGLDPEIDPHALGRHEARKLIEAFEKVKIMAPP--TDCLSPIGEDLI 325
Query: 393 QRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVN-RKTAIRKLRLPG 451
R +E F + P + V K+ +++ + A R L
Sbjct: 326 YRGLEKETTVDFIATSTRKPAVYSGNPFVVEVGMAYGGNLPKEEKISIMRFANRVPLLYQ 385
Query: 452 KLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQ 511
+ + + + + GG V + + + I +
Sbjct: 386 QGGCVTTHAVEDIKWKQYGLNQPGGGIPVGPVILLIHVASINVPFTSE---SKDAIADIP 442
Query: 512 QIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKH 571
I + + + + Y + I + +L ++ ++E+
Sbjct: 443 VIKEEIDLAIK----EVARKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAHVLEKDV 498
Query: 572 LFLISPPLFRITQG-----------------TKSVYAHDEEHKQKILEEFKKHGKGKIEI 614
I+P + +I V + E
Sbjct: 499 PD-INPVVAKIMGNLLVHRVIKNNGDGTVDVAIKVKNFGTSAYSFRVHEMLP--CKVSGA 555
Query: 615 SRFKGLGEMLASQLK--ETAMDANKRTLLRVEI 645
+ M + + A +L +I
Sbjct: 556 KPEPKVVTMGNDYDYVWDISASAGSSKVLSYKI 588