RPSBLAST alignment of GI: 254780222 and protein with PDBid: 2zbk

>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530

 Score =  108 bits (269), Expect = 5e-24
 Identities = 71/578 (12%), Positives = 166/578 (28%), Gaps = 72/578 (12%)

Query: 48  SIRILEGLEPVRMRPGMYIGGTDEKALHHLFSEVIDNAMDEVI-AGYANLIEVSLD---- 102
               L   E  +  P +       +AL+    E+I+N++D     G    I++++D    
Sbjct: 6   KFTSLSPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD 65

Query: 103 --GNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDN-STYEISG-GLHGVG 158
                 + VVDNG GIP +          +      +    K+ N  T  + G G+    
Sbjct: 66  ARQIYKVNVVDNGIGIPPQE---------VPNAFGRVLYSSKYVNRQTRGMYGLGVKAAV 116

Query: 159 ISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGD 218
           +         + +  +  N   S++         + K E +  +RG+    R        
Sbjct: 117 LYSQMHQDKPIEIETSPVN---SKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVA 173

Query: 219 KAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLE 278
                 +      ++K+ +   +K  +         +  PE    Y+P       +   E
Sbjct: 174 I-----SIPGDWPKAKSRIYEYIKRTYIITPYAEFIFKDPEGNVTYYPRLTNKIPKPPQE 228

Query: 279 NRSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPEITSYCNTILTDEGGTHESGLRVAL 338
                       K    G  R  ++  I   + +  I  +        G T         
Sbjct: 229 V-----------KPHPYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTT-------- 269

Query: 339 TRGIKKYAELTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVEN 398
              I + A L  NK+  ++  +++      ++  F ++ +F   +   L           
Sbjct: 270 ADKILELAGLKPNKKVKNLTEEEITR----LVETFKKDEDFRSPSADSLS---------- 315

Query: 399 ALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQ 458
                    L++  ++     ++    + +    +    +          +P        
Sbjct: 316 ----VIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVL 371

Query: 459 NIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQ 518
             A+   L   E         +  +     +   + +++ +    S KI       + + 
Sbjct: 372 RYANKIPLIYDEKSDVIWKVVEELDWKRYGIESDQYQMVVMVHLCSTKIPYKSAGKESIA 431

Query: 519 ALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPP 578
            +         E   +  K  +M  A     +++        ++      +    +    
Sbjct: 432 EV---------ENIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLLAYLKYIPEVSRSL 482

Query: 579 LFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISR 616
              +  G K + +  +    + L +        I I  
Sbjct: 483 ATFLASGNKELVSKYQNEISEGLFKLISKKLDLINIEE 520