RPSBLAST alignment of GI: 254780222 and protein with PDBid: 3k9f

>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* Length = 268

 Score =  230 bits (587), Expect = 9e-61
 Identities = 100/245 (40%), Positives = 139/245 (56%), Gaps = 4/245 (1%)

Query: 439 NRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILN 498
           + K    K  L GKL           EL++VEGDSAGGSAKQ R+R  QA+LPLRGK++N
Sbjct: 23  HMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVIN 82

Query: 499 VASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMTDADVDGAHIASLLLTF 558
            A A    I  N++I  ++  +G    + +  ED  Y+K+IIMTDAD DGAHI +LLLTF
Sbjct: 83  TAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTF 142

Query: 559 FYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFK 618
           FY+ M  L+E  H+++  PPL+++++G               LEE +K       + R+K
Sbjct: 143 FYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYK 202

Query: 619 GLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
           GLGEM A QL ET M+   RTL+RV I          +  +N LMG K + R K+I++  
Sbjct: 203 GLGEMNADQLWETTMNPETRTLIRVTIEDL----ARAERRVNVLMGDKVEPRRKWIEDNV 258

Query: 679 SFIDD 683
            F  +
Sbjct: 259 KFTLE 263