RPSBLAST alignment of GI: 254780222 and protein with PDBid: 3nuh
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Length = 420
Score = 93.2 bits (231), Expect = 2e-19
Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 11/160 (6%)
Query: 527 QYREEDLRYEKVIIMTDADVDGAHI--ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
E +E ++ + VD + + Y+ + L E+ L+ F
Sbjct: 268 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLR-GLLEEDAFIERG 326
Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
+ A E+ +++E ++ + I R+KGLGEM QL ET MD R +LRV
Sbjct: 327 ERRQPVASFEQALDWLVKESRR----GLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVT 382
Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
+ LMG + R FI+E A ++
Sbjct: 383 VKDA----IAADQLFTTLMGDAVEPRRAFIEENALKAANI 418