RPSBLAST alignment of GI: 254780222 and protein with PDBid: 3nuh

>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Length = 420
 Score = 93.2 bits (231), Expect = 2e-19
 Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 11/160 (6%)

Query: 527 QYREEDLRYEKVIIMTDADVDGAHI--ASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQ 584
               E   +E ++ +    VD  +      +    Y+ +  L E+    L+    F    
Sbjct: 268 HTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLR-GLLEEDAFIERG 326

Query: 585 GTKSVYAHDEEHKQKILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVE 644
             +   A  E+    +++E ++     + I R+KGLGEM   QL ET MD   R +LRV 
Sbjct: 327 ERRQPVASFEQALDWLVKESRR----GLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVT 382

Query: 645 INKDLNSLKDTQDSINKLMGTKADERFKFIQERASFIDDV 684
           +                LMG   + R  FI+E A    ++
Sbjct: 383 VKDA----IAADQLFTTLMGDAVEPRRAFIEENALKAANI 418