Query gi|254780223|ref|YP_003064636.1| ABC transporter permease [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 360
No_of_seqs 130 out of 4487
Neff 9.4
Searched_HMMs 39220
Date Mon May 23 20:25:59 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780223.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0628 yhhT Predicted permeas 100.0 0 0 363.3 42.3 337 9-357 15-352 (355)
2 pfam01594 UPF0118 Domain of un 100.0 0 0 357.3 44.8 325 11-346 2-327 (327)
3 PRK10983 putative inner membra 100.0 0 0 342.1 40.6 351 2-358 5-357 (363)
4 PRK12287 tqsA putative transpo 100.0 0 0 335.3 42.6 326 1-347 1-330 (344)
5 TIGR02872 spore_ytvI sporulati 100.0 0 0 312.2 42.8 334 10-344 2-347 (350)
6 KOG2365 consensus 99.5 1.7E-11 4.4E-16 89.2 17.7 196 154-353 578-779 (808)
7 COG0628 yhhT Predicted permeas 99.3 6.7E-08 1.7E-12 66.7 32.5 341 6-358 8-349 (355)
8 pfam01594 UPF0118 Domain of un 99.1 6.5E-07 1.7E-11 60.5 31.2 312 15-350 2-327 (327)
9 PRK12287 tqsA putative transpo 98.9 3.3E-06 8.4E-11 56.1 31.4 194 15-229 22-215 (344)
10 TIGR02872 spore_ytvI sporulati 98.2 0.00043 1.1E-08 42.8 26.5 209 13-221 1-219 (350)
11 PRK10983 putative inner membra 98.0 0.0011 2.7E-08 40.3 30.3 99 1-102 1-99 (363)
12 PRK00187 multidrug efflux prot 87.7 1.5 3.9E-05 20.6 29.4 15 38-52 63-77 (462)
13 KOG2262 consensus 86.9 1.7 4.3E-05 20.3 12.8 150 175-325 407-568 (761)
14 PRK06041 flagellar assembly pr 82.6 2.6 6.7E-05 19.1 24.1 34 40-73 55-88 (547)
15 TIGR02120 GspF general secreti 80.9 3 7.7E-05 18.7 9.2 64 38-101 154-222 (414)
16 pfam03169 OPT OPT oligopeptide 75.7 4.3 0.00011 17.7 19.3 121 214-338 340-473 (605)
17 PRK10478 putative fructose-lik 63.0 8 0.0002 16.1 13.6 191 157-359 100-351 (359)
18 PRK00523 hypothetical protein; 60.3 8.9 0.00023 15.8 3.9 22 182-204 28-49 (73)
19 PRK09575 vmrA multidrug efflux 53.3 12 0.0003 15.0 32.1 42 316-357 405-452 (456)
20 pfam03672 UPF0154 Uncharacteri 53.3 11 0.00027 15.3 2.3 20 183-203 21-40 (64)
21 pfam04306 DUF456 Protein of un 53.1 12 0.0003 15.0 6.1 24 52-75 55-78 (140)
22 PRK10683 putrescine transporte 49.9 13 0.00034 14.7 20.0 50 289-339 250-299 (317)
23 PRK04949 putative sulfate tran 44.8 16 0.0004 14.2 22.6 94 240-342 143-238 (251)
24 TIGR01478 STEVOR variant surfa 42.7 17 0.00043 14.0 5.0 130 207-353 172-304 (315)
25 pfam11696 DUF3292 Protein of u 39.7 19 0.00048 13.7 3.5 32 20-52 132-163 (641)
26 COG3216 Uncharacterized protei 36.1 22 0.00055 13.3 9.7 45 232-276 36-81 (184)
27 TIGR01625 YidE_YbjL_dupl YidE/ 35.8 22 0.00056 13.3 5.3 47 214-260 89-135 (165)
28 PRK13022 secF preprotein trans 35.1 22 0.00057 13.2 12.6 53 207-259 118-171 (294)
29 PRK10459 colanic acid exporter 34.6 23 0.00058 13.2 32.8 27 32-58 112-142 (492)
30 PRK13954 mscL large-conductanc 32.8 24 0.00062 13.0 6.1 48 164-212 70-117 (120)
31 TIGR00966 3a0501s07 protein-ex 32.6 24 0.00061 13.1 1.4 37 182-218 226-262 (307)
32 COG4658 RnfD Predicted NADH:ub 31.7 25 0.00065 12.9 3.9 33 24-56 36-68 (338)
33 pfam03323 GerA Bacillus/Clostr 31.1 26 0.00066 12.8 5.5 103 234-343 314-430 (468)
34 pfam04281 Tom22 Mitochondrial 31.0 26 0.00067 12.8 5.3 55 187-245 58-112 (136)
35 KOG0569 consensus 30.1 27 0.00069 12.7 17.0 54 306-359 411-468 (485)
36 PRK10367 DNA-damage-inducible 29.6 28 0.0007 12.7 20.7 31 319-349 400-435 (439)
37 COG4536 CorB Putative Mg2+ and 29.3 28 0.00071 12.7 5.2 42 197-238 45-87 (423)
38 pfam07423 DUF1510 Protein of u 28.4 29 0.00074 12.6 1.6 15 55-69 10-24 (214)
39 PRK10381 ferric enterobactin t 28.4 29 0.00074 12.6 3.0 26 323-353 345-370 (379)
40 pfam01146 Caveolin Caveolin. A 26.3 31 0.0008 12.3 1.9 25 231-255 73-97 (148)
41 PRK13460 F0F1 ATP synthase sub 26.1 32 0.00081 12.3 5.2 14 41-54 35-48 (173)
42 pfam08006 DUF1700 Protein of u 25.8 32 0.00082 12.3 12.2 35 313-348 137-171 (181)
43 TIGR00915 2A0602 RND transport 24.9 34 0.00085 12.1 4.2 84 157-243 478-566 (1058)
44 PRK12911 bifunctional preprote 24.1 35 0.00088 12.1 8.4 49 211-259 1230-1279(1405)
45 pfam07869 DUF1656 Protein of u 23.9 35 0.00089 12.0 2.8 30 30-59 9-38 (58)
46 PRK13461 F0F1 ATP synthase sub 23.8 35 0.0009 12.0 5.3 20 36-55 19-38 (159)
47 PRK01766 multidrug efflux prot 22.4 37 0.00095 11.9 31.8 25 323-347 412-436 (452)
48 TIGR02380 ECA_wecA undecapreny 21.3 39 0.001 11.7 5.5 43 301-358 233-276 (349)
49 PRK10334 mechanosensitive chan 20.4 41 0.001 11.6 11.5 25 223-247 76-100 (285)
No 1
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=100.00 E-value=0 Score=363.26 Aligned_cols=337 Identities=18% Similarity=0.271 Sum_probs=275.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999999999999999999989999999831888059999999999999999999999999999
Q gi|254780223|r 9 QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88 (360)
Q Consensus 9 ~~~~~~l~~~~~~~~l~~~~~~l~pi~~a~~la~ll~p~~~~l~~~~~~~~~~~a~l~~i~~~~~~~~~~~~~~~~~~~~ 88 (360)
+.....+.........|.+++++.|+++|.++||+++|+++|++||+ .||..+..++.++...++......+.|.+.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~A~vla~l~~p~~~~L~k~~-~~r~~a~~~~~~l~~~~i~~~~~~~~p~~~~~ 93 (355)
T COG0628 15 RILLLLLLLLLLLAILYFFQPILLPLLLALVLAYLLNPLVRRLEKRG-IPRLLAVLLVLLLILLLIVLLGLLVIPSLIEQ 93 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999977-75089999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999997888999998510000133666654222456766665566555677899999999999999998667
Q gi|254780223|r 89 MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168 (360)
Q Consensus 89 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 168 (360)
.+++.+++++ .+...+..+...+......... ....+...+ .. ....+...+...+...+..+...+.+
T Consensus 94 ~~~l~~~~~~-~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (355)
T COG0628 94 IQNLIKNLPG-LDLLQARLAKLLESLPLLGERL--PVSVDALLS----AL----LSILQSILGSLLSLLSSLLSLIVSLL 162 (355)
T ss_pred HHHHHHHCHH-HHHHHHHHHHHHHHCCHHCHHH--HHHHHHHHH----HH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999997303-4555677998887430100001--244888999----99----99999899999999999999999999
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 89998997522889899999995000231579999999999888878999999999999999987633998247999999
Q gi|254780223|r 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248 (360)
Q Consensus 169 i~~~~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~gi~~~i~~~i~Gvp~a~llgil~ 248 (360)
++++++||++.|++++.+++.+..|++.+++.++..+++++++++|++||.++++++|+.++++++++|+|||.+||+++
T Consensus 163 l~~~~~ff~L~d~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~yi~gq~i~al~~gi~~~igl~ilgvp~alllgil~ 242 (355)
T COG0628 163 LVLVLLFFLLLDGERLRRKLIKLLPRKLRKRARRILSEVNATLSGYLRGQVLVALIVGILTGIGLLILGVPYALLLGLLA 242 (355)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99999999990589999999987763346899999999999999999999999999999999999999153899999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99988311456-99999999999728869999999999999997024545566515468889999999999999988979
Q gi|254780223|r 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327 (360)
Q Consensus 249 ~i~~~IP~~G~-i~~~~~~~~~~~~~~~~~~i~~~i~~~~v~~~~~~il~P~l~g~~~~l~p~~vllsi~~g~~l~G~~G 327 (360)
|++|+|||+|+ +.++|+.+++..+++++.++..++.+.++|+++||+++|+++|+++|+||+++++|+++|+++||++|
T Consensus 243 g~~~lIP~iG~~i~~ip~~i~al~~~~~~~~l~~~~~~~vi~~i~~n~l~P~l~g~~~~l~p~~ilisll~g~~l~G~~G 322 (355)
T COG0628 243 GLLSLIPYIGPVIGLIPAVIIALLQGGPWGALLVLIVFLVIQQIEGNILRPKLMGKRLGLHPLVILLSLLGGGSLFGFVG 322 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99998710249999999999999976668899999999999983644005076258889999999999999999987979
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 999999999999999999862003542100
Q gi|254780223|r 328 LFIGPVLMALIAVIWKESIMAIKENKEKIS 357 (360)
Q Consensus 328 ~ilg~p~~a~~~~i~~~~~~~~~~~~~~~~ 357 (360)
+++|||+++++++.+|++.....+++++.+
T Consensus 323 ~ila~pl~~~~k~~~~~~~~~~~~~~~~~~ 352 (355)
T COG0628 323 LILAPPLAAVLKVLLRAWLEEELLAELLGD 352 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999999999999999998652000023454
No 2
>pfam01594 UPF0118 Domain of unknown function DUF20. This transmembrane region is found in putative permeases and predicted transmembrane proteins it has no known function. It is not clear what source suggested that these proteins may be permeases and this information should be treated with caution.
Probab=100.00 E-value=0 Score=357.27 Aligned_cols=325 Identities=20% Similarity=0.316 Sum_probs=286.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999998999999983188805999999999999999999999999999999
Q gi|254780223|r 11 IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90 (360)
Q Consensus 11 ~~~~l~~~~~~~~l~~~~~~l~pi~~a~~la~ll~p~~~~l~~~~~~~~~~~a~l~~i~~~~~~~~~~~~~~~~~~~~~~ 90 (360)
+..++...++...+|.++|++.|+++|.++|++++|+++|++|| +.||++++..++++...++..+.....+...+|..
T Consensus 2 ~l~i~~~~~~~~~l~~~~~~l~p~~~a~~ia~~~~P~~~~l~~~-~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 80 (327)
T pfam01594 2 LLILIFLLLILAFIWFINDLLVPLLIALVLAYLLNPVVRFLKRR-GIPRSLAILLVLLLFLVALVLLGLLLIPLLIIQLT 80 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999999999999999870-89816999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999788899999851000013366665422245676666556655567789999999999999999866789
Q gi|254780223|r 91 ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170 (360)
Q Consensus 91 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~ 170 (360)
+..++.++..++..+..+...+..... ....+.......+...+..+...+...+..++..+.+.+.+++
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (327)
T pfam01594 81 QLIKSLPQYIDSLLNWLNELPELLPEL----------ENVIQQLNSSLSDILSNILSSILNSLLSLLASLPGLLLQLILV 150 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999987999999999999888750444----------3347788888999999889999999999999999999999999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99899752288989999999500023157999999999988887899999999999999998763399824799999999
Q gi|254780223|r 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250 (360)
Q Consensus 171 ~~~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~gi~~~i~~~i~Gvp~a~llgil~~i 250 (360)
++.+||++.|+++++++..+..|++++++.++..+++++.+++|++||..++.++|++++++++++|+|||.+||+++|+
T Consensus 151 ~~~~f~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~~y~~~~~i~a~~~g~~~~i~~~i~gvp~~~~lg~l~~i 230 (327)
T pfam01594 151 LVLTFFFLLDGERLRQGIISFLPKRYRERVDAILREINDTLGGYLLGQVIVALIIGVLTFIGLLILGVPYALLLALLVGL 230 (327)
T ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999686898989998686001799999999999999999999999999999999999999388749999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 988311456-9999999999972886999999999999999702454556651546888999999999999998897999
Q gi|254780223|r 251 MAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329 (360)
Q Consensus 251 ~~~IP~~G~-i~~~~~~~~~~~~~~~~~~i~~~i~~~~v~~~~~~il~P~l~g~~~~l~p~~vllsi~~g~~l~G~~G~i 329 (360)
+|+||++|+ ++++|++++...+++++.++..++.+.++|+++||+++||++||++++||+++++++++|+.+||++|++
T Consensus 231 l~~IP~vG~~i~~ip~~~~~~~~~~~~~ai~~~~~~~~v~~i~~~~l~P~l~g~~~~l~p~~~l~~i~~g~~~~G~~G~~ 310 (327)
T pfam01594 231 ANLIPYIGPVIILIPIAIYALLTGGIWAGLIVLIGVLLIQQIEDNILRPKLMGKRLGLHPLVILLSLIGGGSLFGLVGLI 310 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987530599999999999998688999999999999999966600110246889998999999999999998696999
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998
Q gi|254780223|r 330 IGPVLMALIAVIWKESI 346 (360)
Q Consensus 330 lg~p~~a~~~~i~~~~~ 346 (360)
+|||+++++++++|+|.
T Consensus 311 lg~pi~~~~~~~~~~~~ 327 (327)
T pfam01594 311 LAPPLTAVLKAILDAYR 327 (327)
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999999749
No 3
>PRK10983 putative inner membrane protein; Provisional
Probab=100.00 E-value=0 Score=342.14 Aligned_cols=351 Identities=17% Similarity=0.302 Sum_probs=295.3
Q ss_pred CCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6443887899999999-999999999999999999999999999899999998318880599999999999999999999
Q gi|254780223|r 2 RETMLNPQGIMRWMIM-FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80 (360)
Q Consensus 2 r~~~~~~~~~~~~l~~-~~~~~~l~~~~~~l~pi~~a~~la~ll~p~~~~l~~~~~~~~~~~a~l~~i~~~~~~~~~~~~ 80 (360)
||++...|.+.++++. .+.....|.++||+.|+++|+++|++++|+++|++||++.||++++.+.+++..++++.|+..
T Consensus 5 ~~~~~~~~~~~~lll~a~l~~~~~~il~PFl~~llwA~ilai~~~Pl~~rL~~~~~~r~~laA~l~~~lv~l~vi~Pl~~ 84 (363)
T PRK10983 5 RQPRDLAQILLSVLFLAIMIVACLWIVQPFILGFAWAGMVVIATWPLLLRLQKILWGRRSLAVLVMTLLLVLLFVIPIAL 84 (363)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 45465999999999999999999999999899999999999998599999998818983099999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999978889999985100001-33666654222456766665566555677899999999999
Q gi|254780223|r 81 LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW-ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159 (360)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (360)
+...+.+|..+..+.+++...... ..++.++.+.... ..+.+.+..+...+...+...... +...+...+..++
T Consensus 85 l~~~l~~~~~~l~~~~~~~~~~~~-~~~~l~~~P~ig~~l~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~l~~~~~~ 159 (363)
T PRK10983 85 LVNSLVDNSGPLIKAISSGDMTLP-DLAWLNSIPLIGAKLYAGWHNLLDMGGTALMAKVRPYI----GTTTTWFVGQAAH 159 (363)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_conf 999999999999999863788888-16899856630078899999987165999999999999----9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999866789998997522889899999995000231579999999999888878999999999999999987633998
Q gi|254780223|r 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239 (360)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~gi~~~i~~~i~Gvp 239 (360)
......+++++++.+||++.|+++..+.+++..++..+++.+++.++..+++|+.+.|...++++||++.++++++.|+|
T Consensus 160 ~g~~~l~~~~~l~~~ffl~~dg~~l~~~~~~~~~~l~~~~~~~l~~~~~~tiravv~G~~~vAliQG~l~gig~~iaGvp 239 (363)
T PRK10983 160 IGRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAISGVP 239 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999998458989999998503471358999999999999999999999999999999999993896
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 24799999999988311456999999999997288699999999999999970245455665154688899999999999
Q gi|254780223|r 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319 (360)
Q Consensus 240 ~a~llgil~~i~~~IP~~G~i~~~~~~~~~~~~~~~~~~i~~~i~~~~v~~~~~~il~P~l~g~~~~l~p~~vllsi~~g 319 (360)
+|.+||+++++++++|++++.++.|.++++..++++++++.+.++..+ ....||++||.++|++.++||.++++++++|
T Consensus 240 ~a~l~~v~t~~~aiipiG~~lVw~Pa~iyl~~~G~~~~ai~l~~~~~v-V~~iDNvlRP~Li~~~~~lp~l~il~gvlGG 318 (363)
T PRK10983 240 YATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSCV-VGTLDNVIRPMLIRMGADLPLILILSGVIGG 318 (363)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 689999999999884215199999999999983867999999999999-9851331443533689999669999999975
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999889799999999999999999998620035421002
Q gi|254780223|r 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358 (360)
Q Consensus 320 ~~l~G~~G~ilg~p~~a~~~~i~~~~~~~~~~~~~~~~~ 358 (360)
...||..|+++||.++++...+||+|.++.+++.++++|
T Consensus 319 l~~fG~iGlfiGPvilal~~~l~~~w~~e~~~~~~~~~~ 357 (363)
T PRK10983 319 LIAFGMIGLFIGPVVLAVSWRLFSAWVHEVPPPTDQPEE 357 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 999814499897999999999999998627998778678
No 4
>PRK12287 tqsA putative transport protein; Reviewed
Probab=100.00 E-value=0 Score=335.33 Aligned_cols=326 Identities=14% Similarity=0.188 Sum_probs=250.1
Q ss_pred CCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 96443887899---999999999999999999999999999999999899999998318880599999999999999999
Q gi|254780223|r 1 MRETMLNPQGI---MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77 (360)
Q Consensus 1 mr~~~~~~~~~---~~~l~~~~~~~~l~~~~~~l~pi~~a~~la~ll~p~~~~l~~~~~~~~~~~a~l~~i~~~~~~~~~ 77 (360)
|-|+.++-+.+ ..+...+++...++..++++.|+++|.++||+++|+++|++|+ +.+|+++..+++.+....+.
T Consensus 1 ~~~~~~~~~~lr~li~l~~~vi~~~~l~~~~~il~P~iiA~~la~ll~Plv~~Ler~-~ipr~la~~lv~~~~~~~~~-- 77 (344)
T PRK12287 1 MAKPIITLNGLKIVIMLGMLVIILCGIRFAADIIVPFILALFIAVVLNPLVQHMVRW-RVPRVLAVSLLMTIIVMLMV-- 77 (344)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH--
T ss_conf 997177998899999999999999999999999999999999999999999999877-99849999999999999999--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999978889999985100001336666542224567666655665556778999999999
Q gi|254780223|r 78 LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157 (360)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (360)
.+.+.+..+..++.+++|++.++..+..++..+........ ...++. .+... .+...+...+..
T Consensus 78 --~~~~~l~~~i~~~~~~lp~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~----~~~~~---~~~~~~~~~~~~ 141 (344)
T PRK12287 78 --LLLAYLGSSLNELARTLPQYRNSIMEPLQALEPLLQRVGID-------VSVDQL----AKYID---PNAAMTLVTNLL 141 (344)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCHHHH----HHHHC---HHHHHHHHHHHH
T ss_conf --99999999999999987999999999999999998738966-------559999----97725---558999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999998667899989975228898999999950002315799999999998888789999999999999999876339
Q gi|254780223|r 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237 (360)
Q Consensus 158 ~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~gi~~~i~~~i~G 237 (360)
++..+...+.++.++.++|++.|+++.++++++..|+. ++..+..++..+.+++|++||..++++.|+.++++++++|
T Consensus 142 ~~~~~~~~~~~~~l~~~~f~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~Yl~g~~ii~~i~gv~~~i~l~ilg 219 (344)
T PRK12287 142 TQLSNAMSSIFLLLLTVVFMLLEVPQLPGKLQQMMARP--VEGMAAIQRALDSVSHYLVLKTAISIITGLVAWAMLAALD 219 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999998999999999975880--7799999999999999999999999999999999999838
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHH
Q ss_conf 982479999999998831145699-9999999997288699999999999999970245455665154688899999999
Q gi|254780223|r 238 VPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316 (360)
Q Consensus 238 vp~a~llgil~~i~~~IP~~G~i~-~~~~~~~~~~~~~~~~~i~~~i~~~~v~~~~~~il~P~l~g~~~~l~p~~vllsi 316 (360)
+|||.+||+++|++|+|||+|+++ .+|+.+.....++++.++++.+.+.++|++|+|+++||++||++++||+++++|+
T Consensus 220 v~~al~lgilaglln~IPyiG~~i~~ip~~~~al~~~~~~~al~v~~~~~viq~ie~nil~P~i~G~~v~l~Pl~vilal 299 (344)
T PRK12287 220 VRFAFVWGLLAFALNYIPNIGSVLAAIPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSL 299 (344)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCEEHHHHHHCCCCCCHHHHHHHH
T ss_conf 83799999999999998777789999999999999846799999999999999997410031644266898889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998897999999999999999999986
Q gi|254780223|r 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347 (360)
Q Consensus 317 ~~g~~l~G~~G~ilg~p~~a~~~~i~~~~~~ 347 (360)
++|+++||+.|+++|.|+++.+++++++...
T Consensus 300 l~gg~l~Gi~G~lLAVPl~aiikii~~~~~~ 330 (344)
T PRK12287 300 IFWGWLLGPVGMLLSVPLTIIVKIALEQTAG 330 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999998695999999999999999970843
No 5
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI; InterPro: IPR014227 This entry contains the sporulation protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E . Second, mutation leads to a sporulation defect. Third, it is found in exactly those genomes whose bacteria are capable of sporulation, except that it is absent in Clostridium acetobutylicum ATCC 824. YtvI has extensive hydrophobic regions and is likely to be an integral membrane protein..
Probab=100.00 E-value=0 Score=312.23 Aligned_cols=334 Identities=18% Similarity=0.193 Sum_probs=281.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999899999998318880599999999999999999999999999999
Q gi|254780223|r 10 GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89 (360)
Q Consensus 10 ~~~~~l~~~~~~~~l~~~~~~l~pi~~a~~la~ll~p~~~~l~~~~~~~~~~~a~l~~i~~~~~~~~~~~~~~~~~~~~~ 89 (360)
.+.-....++.....++..|+..|++.|+++|.+++|.++||+||.+.||..+..++..+++++.+..++..+..+++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~p~~~Pf~~Al~~A~~l~P~V~~L~~k~~~pR~lav~i~l~~f~~~~~~~l~~~Vt~~v~~~ 81 (350)
T TIGR02872 2 LILLILLIAILVLAIYFILPYSLPFVIALILALILEPAVRFLEKKLKLPRALAVLIVLLIFLGIIGGLLYILVTELVTET 81 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89998999999999999999999999999999997044789998625885078999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999978--------889999985100--00133666654222456766665566555677899999999999
Q gi|254780223|r 90 KELVSKVVLANQHG--------IPVPRWLSDIPG--GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159 (360)
Q Consensus 90 ~~~~~~l~~~~~~~--------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (360)
..+.+++|++.++. .+..+.+.+... -++.+++.+.+..+.-....+...+....-.+.+.+...+..+.
T Consensus 82 ~~L~~~~P~~~~~~v~y~e~~f~~~i~~l~~~~~~~~~~Lp~~~~~~I~~~i~~~~~~~~~~~~~~~~~~~~~i~~f~~~ 161 (350)
T TIGR02872 82 IALAENLPQYLNEIVLYLEKLFNDHILPLIDDLESYYDSLPPGQQYTITDNIQTLLEKLLNYVAEFATNLITSITSFIAS 161 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999888999999999999999999999999998886169469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999866789998997522889899999995000231579999999999888878999999999999999987633998
Q gi|254780223|r 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239 (360)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~gi~~~i~~~i~Gvp 239 (360)
.+++++.+++.++.+||+.+|.+++.+.+++.+|.+.+++.+.+.++..+..-+|.++|++.+.++.+.+.+|+.++|++
T Consensus 162 ~P~~l~~~~~~LiA~Ffis~Dl~~l~~~~~~~lP~~~~~~~~~i~~~~~k~~~Gf~KAQ~~L~~~t~~~~liGL~~l~v~ 241 (350)
T TIGR02872 162 IPNFLIVLLFTLIATFFISKDLPRLKSKLFSILPERTSQKLKNIFSELKKALFGFLKAQLILVLITFVIVLIGLLILGVD 241 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 88999999999999999873399999999876657899999999999999999999999999999999999999987305
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 24799999999988311456-999999999-9972886999999999999999702454556651546888999999999
Q gi|254780223|r 240 SHVALGVITAIMAMIPGGAP-ISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317 (360)
Q Consensus 240 ~a~llgil~~i~~~IP~~G~-i~~~~~~~~-~~~~~~~~~~i~~~i~~~~v~~~~~~il~P~l~g~~~~l~p~~vllsi~ 317 (360)
||...|+++++.|++||+|+ .+..|++++ ...+||...|+..+++|.++. +..+++|||++|++.|+||..+++|++
T Consensus 242 Ya~~~~l~i~~vDilPilG~G~v~vPW~L~n~~I~G~~~~gI~LlILY~vv~-i~Rqi~EPKV~s~~iGl~PLatLismy 320 (350)
T TIGR02872 242 YALLLALIIGIVDILPILGPGAVLVPWALYNLFITGNYALGIGLLILYLVVL-ILRQIIEPKVLSSSIGLHPLATLISMY 320 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHCCHHHCCCCCCCHHHHHHHHH
T ss_conf 5999999999999985788999999999999987363579999999999999-999787012620026858899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998897999999999999999999
Q gi|254780223|r 318 GGVRTMGLLGLFIGPVLMALIAVIWKE 344 (360)
Q Consensus 318 ~g~~l~G~~G~ilg~p~~a~~~~i~~~ 344 (360)
+|-++||+.|+++||.+..+++++-+.
T Consensus 321 ~GlklfG~~Gl~~GP~~~v~~kal~~a 347 (350)
T TIGR02872 321 IGLKLFGFLGLIFGPVIVVLFKALIEA 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999962
No 6
>KOG2365 consensus
Probab=99.46 E-value=1.7e-11 Score=89.18 Aligned_cols=196 Identities=17% Similarity=0.172 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999998667899989975228898999---9999500-023157999999999988887899999999999999
Q gi|254780223|r 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ---QLDSLGE-HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229 (360)
Q Consensus 154 ~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~---~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~gi~~ 229 (360)
.+.+..+.+++.++++.+-.+||++...+.... |.....+ +.....-.++...++..+++.+......+...|..+
T Consensus 578 ~s~g~~llNfi~~liIFLt~lyyLLSss~~~~~plqWa~~l~~l~~~~~Ssn~i~~~~e~AI~GVf~aSakmA~FyGlyT 657 (808)
T KOG2365 578 ISGGAELLNFISQLIIFLTVLYYLLSSSSGGVTPLQWAQVLNMLPINASSSNRIVEVLELAISGVFLASAKMAFFYGLYT 657 (808)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97429999999999999999999722567874011064433565579874325899999998889998879999998999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 9987633998247999999999883114569-99999999997-288699999999999999970245455665154688
Q gi|254780223|r 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPI-SFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307 (360)
Q Consensus 230 ~i~~~i~Gvp~a~llgil~~i~~~IP~~G~i-~~~~~~~~~~~-~~~~~~~i~~~i~~~~v~~~~~~il~P~l~g~~~~l 307 (360)
|....++|+...+.=..+++++..+|+.|+. +++|.++-+++ .|..-.|+.+.+...+-....| .-++++--+=
T Consensus 658 wl~h~lf~inivf~pS~lA~I~aa~Pi~p~y~aaIpa~l~LwLv~G~g~~Avil~V~hl~p~~f~d----s~iy~dI~Gs 733 (808)
T KOG2365 658 WLLHRLFNINIVFMPSVLAFISAALPIFPYYFAAIPAALQLWLVEGRGIVAVILSVTHLVPMEFGD----SEIYDDIPGS 733 (808)
T ss_pred HHHHHHHCCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH----HHHHHCCCCC
T ss_conf 999987375089615589999860854524999889999987642766046898998765787521----4552047899
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8999999999999998897999999999999999999986200354
Q gi|254780223|r 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353 (360)
Q Consensus 308 ~p~~vllsi~~g~~l~G~~G~ilg~p~~a~~~~i~~~~~~~~~~~~ 353 (360)
||.++-+++++|...+|..|+++||.+.++.+..-..|..+.....
T Consensus 734 hpYlTGLAIiGG~y~lgl~gaiiGpiilc~~~v~snIyl~~~~~~~ 779 (808)
T KOG2365 734 HPYLTGLAIIGGVYLLGLVGAIIGPIILCFVMVFSNIYLLQGAIMG 779 (808)
T ss_pred CCCEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8542200020442002330453200577789998789998345645
No 7
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=99.32 E-value=6.7e-08 Score=66.66 Aligned_cols=341 Identities=14% Similarity=0.111 Sum_probs=209.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88789999999999999999999999999999999999989999999831888059999999999999999999999999
Q gi|254780223|r 6 LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85 (360)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~l~~~~~~l~pi~~a~~la~ll~p~~~~l~~~~~~~~~~~a~l~~i~~~~~~~~~~~~~~~~~ 85 (360)
+......+................++.|++..+++|..+.=+.+.+.++.. |++.....+..+..+.+...+.......
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~A~vla~l~~p~~~~L~-k~~~~r~~a~~~~~~l~~~~i~~~~~~~ 86 (355)
T COG0628 8 RTLLLGLRILLLLLLLLLLLAILYFFQPILLPLLLALVLAYLLNPLVRRLE-KRGIPRLLAVLLVLLLILLLIVLLGLLV 86 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888889999999999999999999999999999999999999999999999-9777508999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999997888999998510000133666654222456766665566555677899999999999999998
Q gi|254780223|r 86 MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165 (360)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 165 (360)
..+..+..+++.+...+ .+..++. ..+ ................+...+...+...+...+..+...+ ..
T Consensus 87 ~p~~~~~~~~l~~~~~~----~~~~~~~-----~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 155 (355)
T COG0628 87 IPSLIEQIQNLIKNLPG----LDLLQAR-----LAK-LLESLPLLGERLPVSVDALLSALLSILQSILGSLLSLLSS-LL 155 (355)
T ss_pred HHHHHHHHHHHHHHCHH----HHHHHHH-----HHH-HHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_conf 99999999999997303----4555677-----998-8874301000012448889999999999899999999999-99
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 66789998997522889899999995000231579999999999888878999999999999999987633998247999
Q gi|254780223|r 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245 (360)
Q Consensus 166 ~~~i~~~~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~gi~~~i~~~i~Gvp~a~llg 245 (360)
+.++..++..++...--+-.+.+.+...+..+++.++..++.-+.+++-+++.+....+.+++.++..++.=.=.-.-.+
T Consensus 156 ~~~~~~~l~~~~~ff~L~d~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~yi~gq~i~al~~gi~~~igl~ilgvp~a 235 (355)
T COG0628 156 SLIVSLLLVLVLLFFLLLDGERLRRKLIKLLPRKLRKRARRILSEVNATLSGYLRGQVLVALIVGILTGIGLLILGVPYA 235 (355)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 99999999999999999058999999998776334689999999999999999999999999999999999999915389
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999883114569999999-9999728869999999999999997024545566515468889999999999999988
Q gi|254780223|r 246 VITAIMAMIPGGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324 (360)
Q Consensus 246 il~~i~~~IP~~G~i~~~~~~-~~~~~~~~~~~~i~~~i~~~~v~~~~~~il~P~l~g~~~~l~p~~vllsi~~g~~l~G 324 (360)
.+-|++.++=-.=|.++...+ +-.....-..................+++.+=.+-.+-++=.--+--+.++++...+|
T Consensus 236 lllgil~g~~~lIP~iG~~i~~ip~~i~al~~~~~~~~l~~~~~~~vi~~i~~n~l~P~l~g~~~~l~p~~ilisll~g~ 315 (355)
T COG0628 236 LLLGLLAGLLSLIPYIGPVIGLIPAVIIALLQGGPWGALLVLIVFLVIQQIEGNILRPKLMGKRLGLHPLVILLSLLGGG 315 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999871024999999999999997666889999999999998364400507625888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9799999999999999999998620035421002
Q gi|254780223|r 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358 (360)
Q Consensus 325 ~~G~ilg~p~~a~~~~i~~~~~~~~~~~~~~~~~ 358 (360)
-..-+.|..++..+.++.+...++.++++...++
T Consensus 316 ~l~G~~G~ila~pl~~~~k~~~~~~~~~~~~~~~ 349 (355)
T COG0628 316 SLFGFVGLILAPPLAAVLKVLLRAWLEEELLAEL 349 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9987979999999999999999998652000023
No 8
>pfam01594 UPF0118 Domain of unknown function DUF20. This transmembrane region is found in putative permeases and predicted transmembrane proteins it has no known function. It is not clear what source suggested that these proteins may be permeases and this information should be treated with caution.
Probab=99.12 E-value=6.5e-07 Score=60.46 Aligned_cols=312 Identities=13% Similarity=0.081 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999989999999831888059999999999999999999999999999999999
Q gi|254780223|r 15 MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS 94 (360)
Q Consensus 15 l~~~~~~~~l~~~~~~l~pi~~a~~la~ll~p~~~~l~~~~~~~~~~~a~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (360)
+...+........-.++.|++..+++|..+.-..+-+.++.. ||+.+..+............+.........+..+..+
T Consensus 2 ~l~i~~~~~~~~~l~~~~~~l~p~~~a~~ia~~~~P~~~~l~-~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 80 (327)
T pfam01594 2 LLILIFLLLILAFIWFINDLLVPLLIALVLAYLLNPVVRFLK-RRGIPRSLAILLVLLLFLVALVLLGLLLIPLLIIQLT 80 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999999999999999999999999998-7089816999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997888999998510000133666654222456766665566555677899999999999999998667899989
Q gi|254780223|r 95 KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174 (360)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~ 174 (360)
+..+..++.. ++..+. .++.+...+......... +....+..+...+...+...+..+...+..+..+..
T Consensus 81 ~l~~~~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (327)
T pfam01594 81 QLIKSLPQYI---DSLLNW------LNELPELLPELENVIQQL-NSSLSDILSNILSSILNSLLSLLASLPGLLLQLILV 150 (327)
T ss_pred HHHHHHHHHH---HHHHHH------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999879999---999999------998887504443347788-888999999889999999999999999999999999
Q ss_pred HHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 97522889899999995000231579999999999888878999999999999999987633998247999999999883
Q gi|254780223|r 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254 (360)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~gi~~~i~~~i~Gvp~a~llgil~~i~~~I 254 (360)
.+....--+-.+.+.+...+..+++.++..++.-+...+-+++.+....+.+...++..++. ..+. =+
T Consensus 151 ~~~~f~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i~~y~~~~~i~a~~~g~~~~i~-----------~~i~-gv 218 (327)
T pfam01594 151 LVLTFFFLLDGERLRQGIISFLPKRYRERVDAILREINDTLGGYLLGQVIVALIIGVLTFIG-----------LLIL-GV 218 (327)
T ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH-CC
T ss_conf 99999999686898989998686001799999999999999999999999999999999999-----------9993-88
Q ss_pred HHHHHHHHHHHHHH-HHHCCCHHHHH-------------HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 11456999999999-99728869999-------------99999999999702454556651546888999999999999
Q gi|254780223|r 255 PGGAPISFTAVSIY-LLIKGNIFNAT-------------CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320 (360)
Q Consensus 255 P~~G~i~~~~~~~~-~~~~~~~~~~i-------------~~~i~~~~v~~~~~~il~P~l~g~~~~l~p~~vllsi~~g~ 320 (360)
|+.-.+ +....+. .....|+.-+. ...+...+......++.+=.+..+-++=+--+--+.++++.
T Consensus 219 p~~~~l-g~l~~il~~IP~vG~~i~~ip~~~~~~~~~~~~~ai~~~~~~~~v~~i~~~~l~P~l~g~~~~l~p~~~l~~i 297 (327)
T pfam01594 219 PYALLL-ALLVGLANLIPYIGPVIILIPIAIYALLTGGIWAGLIVLIGVLLIQQIEDNILRPKLMGKRLGLHPLVILLSL 297 (327)
T ss_pred CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEHEEECCCCCCCHHHHHHHH
T ss_conf 749999-9999999998753059999999999999868899999999999999996660011024688999899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 998897999999999999999999986200
Q gi|254780223|r 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIK 350 (360)
Q Consensus 321 ~l~G~~G~ilg~p~~a~~~~i~~~~~~~~~ 350 (360)
..+|...-+.|..+...+.++.+..++.+|
T Consensus 298 ~~g~~~~G~~G~~lg~pi~~~~~~~~~~~~ 327 (327)
T pfam01594 298 IGGGSLFGLVGLILAPPLTAVLKAILDAYR 327 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999869699999999999999999749
No 9
>PRK12287 tqsA putative transport protein; Reviewed
Probab=98.95 E-value=3.3e-06 Score=56.07 Aligned_cols=194 Identities=10% Similarity=0.023 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999989999999831888059999999999999999999999999999999999
Q gi|254780223|r 15 MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS 94 (360)
Q Consensus 15 l~~~~~~~~l~~~~~~l~pi~~a~~la~ll~p~~~~l~~~~~~~~~~~a~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (360)
+.....-..-..+-|++..++.|.++.-+.+.+.++=..| ... ........+.....+...+..-.....++.++..+
T Consensus 22 i~~~~l~~~~~il~P~iiA~~la~ll~Plv~~Ler~~ipr-~la-~~lv~~~~~~~~~~~~~~l~~~i~~~~~~lp~~~~ 99 (344)
T PRK12287 22 IILCGIRFAADIIVPFILALFIAVVLNPLVQHMVRWRVPR-VLA-VSLLMTIIVMLMVLLLAYLGSSLNELARTLPQYRN 99 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999998779984-999-99999999999999999999999999998799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997888999998510000133666654222456766665566555677899999999999999998667899989
Q gi|254780223|r 95 KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174 (360)
Q Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~ 174 (360)
++.+..++ ..++.++.......++..+...++ ... +...+..++..+...+.....+..++++
T Consensus 100 ~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~f~l 162 (344)
T PRK12287 100 SIMEPLQA---LEPLLQRVGIDVSVDQLAKYIDPN-------AAM-------TLVTNLLTQLSNAMSSIFLLLLTVVFML 162 (344)
T ss_pred HHHHHHHH---HHHHHHHCCCCCCHHHHHHHHCHH-------HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999---999987389665599999772555-------899-------9999999999999999999999999999
Q ss_pred HHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9752288989999999500023157999999999988887899999999999999
Q gi|254780223|r 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229 (360)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~gi~~ 229 (360)
+......++.++...+... .. +..++..+.+++.++.-..-...+++..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~i~~Yl~g~~ii~~i~gv~~~i~l 215 (344)
T PRK12287 163 LEVPQLPGKLQQMMARPVE-GM-AAIQRALDSVSHYLVLKTAISIITGLVAWAML 215 (344)
T ss_pred HHHHHHHHHHHHHCCCHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9899999999997588077-99-99999999999999999999999999999999
No 10
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI; InterPro: IPR014227 This entry contains the sporulation protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E . Second, mutation leads to a sporulation defect. Third, it is found in exactly those genomes whose bacteria are capable of sporulation, except that it is absent in Clostridium acetobutylicum ATCC 824. YtvI has extensive hydrophobic regions and is likely to be an integral membrane protein..
Probab=98.19 E-value=0.00043 Score=42.83 Aligned_cols=209 Identities=14% Similarity=0.128 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999899999998318880599999999999999999999999999999999
Q gi|254780223|r 13 RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92 (360)
Q Consensus 13 ~~l~~~~~~~~l~~~~~~l~pi~~a~~la~ll~p~~~~l~~~~~~~~~~~a~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 92 (360)
+.+..+......|....+..|..+=+++|+++.-+.+--.++...|-+..+.......+..+...........+.+.-+-
T Consensus 1 r~~~~~~~~~~~~~~~~~~~p~~~Pf~~Al~~A~~l~P~V~~L~~k~~~pR~lav~i~l~~f~~~~~~~l~~~Vt~~v~~ 80 (350)
T TIGR02872 1 RLILLILLIAILVLAIYFILPYSLPFVIALILALILEPAVRFLEKKLKLPRALAVLIVLLIFLGIIGGLLYILVTELVTE 80 (350)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999899999999999999999999999999999704478999862588507899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999788899-99985--10000133666654222456----766665566555677899999999999999998
Q gi|254780223|r 93 VSKVVLANQHGIPVP-RWLSD--IPGGMWASELWTKHLSHPQS----LKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165 (360)
Q Consensus 93 ~~~l~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 165 (360)
...+.+..++..+.. ...++ ........++.++..++.++ .-.++.+...++..+...+++.+..++..+++.
T Consensus 81 ~~~L~~~~P~~~~~~v~y~e~~f~~~i~~l~~~~~~~~~~Lp~~~~~~I~~~i~~~~~~~~~~~~~~~~~~~~~i~~f~~ 160 (350)
T TIGR02872 81 TIALAENLPQYLNEIVLYLEKLFNDHILPLIDDLESYYDSLPPGQQYTITDNIQTLLEKLLNYVAEFATNLITSITSFIA 160 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999988899999999999999999999999999888616946999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66789998997522889899999995---000231579999999999888878999999
Q gi|254780223|r 166 SIIFMIIALFFFYRDGFSISQQLDSL---GEHLFPAYWKKISRIVPKVIRSTFLGMTII 221 (360)
Q Consensus 166 ~~~i~~~~~~~~l~~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 221 (360)
+.-=.+....+.+...-.+.+-..+. ..+..++|+++..+.+.+..+..+.|-..-
T Consensus 161 ~~P~~l~~~~~~LiA~Ffis~Dl~~l~~~~~~~lP~~~~~~~~~i~~~~~k~~~Gf~KA 219 (350)
T TIGR02872 161 SIPNFLIVLLFTLIATFFISKDLPRLKSKLFSILPERTSQKLKNIFSELKKALFGFLKA 219 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98899999999999999987339999999987665789999999999999999999999
No 11
>PRK10983 putative inner membrane protein; Provisional
Probab=97.99 E-value=0.0011 Score=40.34 Aligned_cols=99 Identities=8% Similarity=0.005 Sum_probs=58.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96443887899999999999999999999999999999999999899999998318880599999999999999999999
Q gi|254780223|r 1 MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80 (360)
Q Consensus 1 mr~~~~~~~~~~~~l~~~~~~~~l~~~~~~l~pi~~a~~la~ll~p~~~~l~~~~~~~~~~~a~l~~i~~~~~~~~~~~~ 80 (360)
|-.++..++..-..+....+....+.....+.|++.+.+.|.++.-...-+.+|...+.+....++..+.+.++.. ..
T Consensus 1 ~~~~~~~~~~~~~~~~lll~a~l~~~~~~il~PFl~~llwA~ilai~~~Pl~~rL~~~~~~r~~laA~l~~~lv~l--~v 78 (363)
T PRK10983 1 MVNPRQPRDLAQILLSVLFLAIMIVACLWIVQPFILGFAWAGMVVIATWPLLLRLQKILWGRRSLAVLVMTLLLVL--LF 78 (363)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HH
T ss_conf 9987454659999999999999999999999998999999999999985999999988189830999999999999--99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999997
Q gi|254780223|r 81 LFYYGMLEMKELVSKVVLANQH 102 (360)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~ 102 (360)
++|... -..+..++..+..+.
T Consensus 79 i~Pl~~-l~~~l~~~~~~l~~~ 99 (363)
T PRK10983 79 VIPIAL-LVNSLVDNSGPLIKA 99 (363)
T ss_pred HHHHHH-HHHHHHHHHHHHHHH
T ss_conf 999999-999999999999999
No 12
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=87.65 E-value=1.5 Score=20.58 Aligned_cols=15 Identities=0% Similarity=-0.332 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999989999999
Q gi|254780223|r 38 LIIGFTSWPIYSSFI 52 (360)
Q Consensus 38 ~~la~ll~p~~~~l~ 52 (360)
..++....+++.+-.
T Consensus 63 ~g~~~g~~~lvaq~~ 77 (462)
T PRK00187 63 VGVIAAVGTLVAIRH 77 (462)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999997
No 13
>KOG2262 consensus
Probab=86.90 E-value=1.7 Score=20.31 Aligned_cols=150 Identities=20% Similarity=0.205 Sum_probs=99.1
Q ss_pred HHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCH-HHHHHHHHHHHH
Q ss_conf 9752288989999999500023157999999999988887899999999999999998763-39982-479999999998
Q gi|254780223|r 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL-AGVPS-HVALGVITAIMA 252 (360)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~gi~~~i~~~i-~Gvp~-a~llgil~~i~~ 252 (360)
...+.++..+.+..++-.. +..+.-.++.++-++.=.-++...++.++..++..+.++-- ...|. .+++++..++..
T Consensus 407 Hv~Lf~gkdiw~~~~~~~~-k~~DiHtrlMkkYKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf 485 (761)
T KOG2262 407 HVALFNGKDIWQQTKKAFN-KKMDIHTRLMKKYKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVF 485 (761)
T ss_pred HHEEECCHHHHHHHHHCCC-CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 4112364889999874246-677778999997604837999999999999885413450663457649999999999999
Q ss_pred HHHHHHH--H--------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8311456--9--------99999999997288699999999999999970245455665154688899999999999999
Q gi|254780223|r 253 MIPGGAP--I--------SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322 (360)
Q Consensus 253 ~IP~~G~--i--------~~~~~~~~~~~~~~~~~~i~~~i~~~~v~~~~~~il~P~l~g~~~~l~p~~vllsi~~g~~l 322 (360)
++|.+-. . +..=..+....-+.|...+.+=..+.+..+.-.++++-.=.|.-++++|-.++...+.|..+
T Consensus 486 ~iPigii~AtTNq~~GLNiitE~i~Gy~~PgrPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tiv 565 (761)
T KOG2262 486 TIPIGIIQATTNQTPGLNIITEYIIGYIYPGRPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIV 565 (761)
T ss_pred HCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHH
T ss_conf 63077765542677457799999998506896489999998652109888988864110102147819999999998876
Q ss_pred HHH
Q ss_conf 889
Q gi|254780223|r 323 MGL 325 (360)
Q Consensus 323 ~G~ 325 (360)
-|.
T Consensus 566 s~~ 568 (761)
T KOG2262 566 AGF 568 (761)
T ss_pred HEE
T ss_conf 314
No 14
>PRK06041 flagellar assembly protein J; Reviewed
Probab=82.60 E-value=2.6 Score=19.09 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999989999999831888059999999999999
Q gi|254780223|r 40 IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73 (360)
Q Consensus 40 la~ll~p~~~~l~~~~~~~~~~~a~l~~i~~~~~ 73 (360)
.+-+.+|..+.-.|+.+.++.+.-.++....+..
T Consensus 55 ~~a~~yP~~~~~~~~~~I~~~m~~~iT~M~~LSt 88 (547)
T PRK06041 55 GAAIGYPKIKLDSKRLKINNDLLFFITYMAVLST 88 (547)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999730888754899888630899999999982
No 15
>TIGR02120 GspF general secretion pathway protein F; InterPro: IPR011850 This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the "Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. GspF nearly always clusters with other GSP subunits. However, some genes from Xylella and Xanthomonas strains are excluded from this entry due to excessive divergence.; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=80.86 E-value=3 Score=18.70 Aligned_cols=64 Identities=8% Similarity=0.039 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999989999999831888059999999-----9999999999999999999999999999999999
Q gi|254780223|r 38 LIIGFTSWPIYSSFISKKEESSTFLAVIAT-----VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101 (360)
Q Consensus 38 ~~la~ll~p~~~~l~~~~~~~~~~~a~l~~-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (360)
.-+...++.+.|++|++-..+.++-..++| +....++...+.+++|.+.+++.+.-+++|-...
T Consensus 154 G~L~~VL~RLADylE~rq~lr~Ki~~AliYPa~l~vVa~~vv~~Ll~~VVPkvV~~F~~~~q~LPl~Tr 222 (414)
T TIGR02120 154 GALDAVLERLADYLEERQALRSKITTALIYPAVLTVVAIGVVIFLLAYVVPKVVEQFAHMKQTLPLLTR 222 (414)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHCCCCCCCHHHH
T ss_conf 882468999988999999999999998765899999999999999942044403102319978748999
No 16
>pfam03169 OPT OPT oligopeptide transporter protein. The OPT family of oligopeptide transporters is distinct from the ABC pfam00005 and PTR pfam00854 transporter families. OPT transporters were first recognized in fungi (Candida albicans and Schizosaccharomyces pombe), but this alignment also includes orthologues from Arabidopsis thaliana. OPT transporters are thought to have 12-14 transmembrane domains and contain the following motif: SPYxEVRxxVxxxDDP.
Probab=75.71 E-value=4.3 Score=17.75 Aligned_cols=121 Identities=16% Similarity=0.202 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 789999999999999999876339982-4799999999988311------------456999999999997288699999
Q gi|254780223|r 214 TFLGMTIIAIGEGLVLGSAYWLAGVPS-HVALGVITAIMAMIPG------------GAPISFTAVSIYLLIKGNIFNATC 280 (360)
Q Consensus 214 ~~~g~~~~~~i~gi~~~i~~~i~Gvp~-a~llgil~~i~~~IP~------------~G~i~~~~~~~~~~~~~~~~~~i~ 280 (360)
+...-++.+.+.++.+.-...-.++|. ..++++..++.-.+|. .|.-...-........+++...+.
T Consensus 340 w~~~~~~~~~~~~i~~~~~~~~~~lp~~~~~lai~~a~i~~~~~~~~~g~tg~~P~~~~~~~~~li~g~~~pg~~~a~l~ 419 (605)
T pfam03169 340 WYLAGLVLSLVLGIALVAGLFGTQLPVWGLLLALLLAFVFAIPSAYIAGLTGSNPVSGLGILTELIAGYVLPGRPLANLI 419 (605)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999999999999999986167871999999999999999987872223078714457899999999873673499999
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999702454556651546888999999999999998897999999999999
Q gi|254780223|r 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338 (360)
Q Consensus 281 ~~i~~~~v~~~~~~il~P~l~g~~~~l~p~~vllsi~~g~~l~G~~G~ilg~p~~a~~ 338 (360)
.-.+....-..-++..+=.=.|.-++.+|-..+.+.+.|. ++|.++.++++.+.
T Consensus 420 ~~~~~~~~~~~a~d~~qDlK~G~~lg~~PR~qf~~QiiG~----~vg~~v~~~v~~~~ 473 (605)
T pfam03169 420 FGGVGYNAAAQAGDFMQDLKTGHYTGAPPRAQFVAQLIGT----LVGSVVNPGVLNLL 473 (605)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_conf 9999999999999999997621461899899999999999----99999999999998
No 17
>PRK10478 putative fructose-like permease EIIC subunit 2; Provisional
Probab=63.03 E-value=8 Score=16.05 Aligned_cols=191 Identities=17% Similarity=0.141 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999866789998997522889899999995000231579999999999888878999999999999999987633
Q gi|254780223|r 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236 (360)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~gi~~~i~~~i~ 236 (360)
.++...-+..-+++=++..++-+ -++.++++...|-..-+.. -.-+...+-.|+.+.-+..+-+++..++. -+
T Consensus 100 ~aGFlGaii~GflaGy~v~~lkk--iklp~~l~~l~piliiPll---~tli~g~lm~~vig~Pi~~l~~~L~~~L~--~l 172 (359)
T PRK10478 100 GAGFFGALIAGIIGGIVVHYLKK--IPVHKVLRSVMPIFIIPIV---GTLITAGIMMWGLGEPIGALTNSLTQWLQ--GM 172 (359)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH--CCCCHHHHCCCCEEEHHHH---HHHHHHHHHEEECCHHHHHHHHHHHHHHH--HC
T ss_conf 75158999999999999999986--7996556511566526668---99999888503315699999999999998--65
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCHH--HHHHHHH-----HHHHHHHHCCCE------------
Q ss_conf 998247999999999883114569--9999999999728869--9999999-----999999970245------------
Q gi|254780223|r 237 GVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIF--NATCLFL-----WGAIELFIVDKT------------ 295 (360)
Q Consensus 237 Gvp~a~llgil~~i~~~IP~~G~i--~~~~~~~~~~~~~~~~--~~i~~~i-----~~~~v~~~~~~i------------ 295 (360)
+-.++.++|.+.|.+.-+-++||+ +....+.....++... .+..... ...+...+..+.
T Consensus 173 ~~~~~i~LG~ilG~M~afDmGGPvNK~A~~F~~~~~~~g~~~pmaa~~~a~mvPPlgi~LAt~l~k~~Ft~~Er~~gk~a 252 (359)
T PRK10478 173 QQGSIVMLAVIMGLMLAFDMGGPVNKVAYAFMLICVAQGVYTVVAIAAVAICVPPLGMGLATLIGRKNFSAEERETGKAA 252 (359)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 65338999999998886115785078999999999864870779999998477819999999972104999999988989
Q ss_pred -----------EEEEEECCCCCCCHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHH
Q ss_conf -----------455665154688899999999999999889-----------------------------7999999999
Q gi|254780223|r 296 -----------LRPFLVGGPIKLPFLPTFFGLVGGVRTMGL-----------------------------LGLFIGPVLM 335 (360)
Q Consensus 296 -----------l~P~l~g~~~~l~p~~vllsi~~g~~l~G~-----------------------------~G~ilg~p~~ 335 (360)
-=|.-.. +|.-++-|...|+.+-|. .++++|-.+.
T Consensus 253 ~~mG~~~ITEGAIPFaa~-----DP~rvIpa~~iGsav~g~l~~~~gv~~~aPhGGifv~p~~~~~l~y~~ai~iGs~vt 327 (359)
T PRK10478 253 LVMGCVGVTEGAIPFAAA-----DPLRVIPSIMVGSVCGAVTAALFGAQCYAGWGGLIVLPVVEGKLGYIAAVAVGAVVT 327 (359)
T ss_pred HHHHHHHHCCCCHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHCCCHHHHHHHHHHHHHHH
T ss_conf 998998816451066771-----837888799998799999999948865689864574233147699999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 999999999986200354210027
Q gi|254780223|r 336 ALIAVIWKESIMAIKENKEKISSN 359 (360)
Q Consensus 336 a~~~~i~~~~~~~~~~~~~~~~~~ 359 (360)
+++..++|....+.+++.++.+||
T Consensus 328 a~~~~~lKk~~~~~~~~~~~~e~d 351 (359)
T PRK10478 328 AVCVNVLKSLARKNGSSTDEKEDD 351 (359)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 999999614000132123433443
No 18
>PRK00523 hypothetical protein; Provisional
Probab=60.34 E-value=8.9 Score=15.75 Aligned_cols=22 Identities=9% Similarity=-0.019 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 98999999950002315799999
Q gi|254780223|r 182 FSISQQLDSLGEHLFPAYWKKIS 204 (360)
Q Consensus 182 ~~~~~~~~~~~p~~~~~~~~~~~ 204 (360)
..+.+.+++. |+..++..+...
T Consensus 28 k~~~k~lk~N-PPI~E~mir~M~ 49 (73)
T PRK00523 28 KYFKKQLREN-PPITENQIRAMY 49 (73)
T ss_pred HHHHHHHHHC-CCCCHHHHHHHH
T ss_conf 9999988668-599999999999
No 19
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=53.33 E-value=12 Score=15.03 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999889799999999999------99999999862003542100
Q gi|254780223|r 316 LVGGVRTMGLLGLFIGPVLMAL------IAVIWKESIMAIKENKEKIS 357 (360)
Q Consensus 316 i~~g~~l~G~~G~ilg~p~~a~------~~~i~~~~~~~~~~~~~~~~ 357 (360)
.+.....||..|..+|.|+.-. ....||+..+-+|+++.|++
T Consensus 405 ~~il~~~~G~~GiW~a~~is~~~~~~~~~~~~~r~~kkl~k~~~~~~~ 452 (456)
T PRK09575 405 LFILPKWLGIDGVWLAMPLSNIALSLVVAPMLWRDLKKLKKKHPTETS 452 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999981759999999999999999999999999998542878668
No 20
>pfam03672 UPF0154 Uncharacterized protein family (UPF0154). This family contains a set of short bacterial proteins of unknown function.
Probab=53.31 E-value=11 Score=15.25 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=6.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHH
Q ss_conf 899999995000231579999
Q gi|254780223|r 183 SISQQLDSLGEHLFPAYWKKI 203 (360)
Q Consensus 183 ~~~~~~~~~~p~~~~~~~~~~ 203 (360)
.+.+.+.+. |+..++..+..
T Consensus 21 ~~~k~lk~N-PPinE~mir~M 40 (64)
T pfam03672 21 IMKKQLKKN-PPINEDMIRMM 40 (64)
T ss_pred HHHHHHHHC-CCCCHHHHHHH
T ss_conf 999998678-69999999999
No 21
>pfam04306 DUF456 Protein of unknown function (DUF456). Putative membrane protein.
Probab=53.11 E-value=12 Score=15.00 Aligned_cols=24 Identities=21% Similarity=0.051 Sum_probs=8.9
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 983188805999999999999999
Q gi|254780223|r 52 ISKKEESSTFLAVIATVSVMCLFI 75 (360)
Q Consensus 52 ~~~~~~~~~~~a~l~~i~~~~~~~ 75 (360)
.||.+.+|+-......-.....+.
T Consensus 55 akk~G~s~~~~~ga~iG~ivG~f~ 78 (140)
T pfam04306 55 AKRFGASKWGLWGAAIGGIVGLFV 78 (140)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 997189389899999999999998
No 22
>PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional
Probab=49.93 E-value=13 Score=14.69 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=24.3
Q ss_pred HHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 997024545566515468889999999999999988979999999999999
Q gi|254780223|r 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339 (360)
Q Consensus 289 ~~~~~~il~P~l~g~~~~l~p~~vllsi~~g~~l~G~~G~ilg~p~~a~~~ 339 (360)
....+.+..|.++|+.-..--..++-.-++...=|+ .|.-+|..++.+..
T Consensus 250 i~a~g~F~iP~lLGG~~~~~i~~~i~~~f~~~~dwp-~aaAlavvLl~i~i 299 (317)
T PRK10683 250 IPAVGEFVIPELLGGPDSIMIGRVLWQEFFNNRDWP-VASAVAIIMLLLLI 299 (317)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHH
T ss_conf 999888776866429985629999999998746805-89999999999999
No 23
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=44.78 E-value=16 Score=14.19 Aligned_cols=94 Identities=10% Similarity=0.005 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHH--HHHH
Q ss_conf 24799999999988311456999999999997288699999999999999970245455665154688899999--9999
Q gi|254780223|r 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF--FGLV 317 (360)
Q Consensus 240 ~a~llgil~~i~~~IP~~G~i~~~~~~~~~~~~~~~~~~i~~~i~~~~v~~~~~~il~P~l~g~~~~l~p~~vl--lsi~ 317 (360)
|.+..++..++++|||++|.++....... . ..+...+.+.-...|.+=+..+=+.+.++=|....+ -+..
T Consensus 143 y~l~~~i~lllL~fIPvvg~~vapvl~~l---~-----~aw~~a~qy~Dyp~dn~~l~f~~~~~~l~~~r~~slgFG~~~ 214 (251)
T PRK04949 143 YYLPRAIVLLLLSFIPVVGQTVAPVLWFL---F-----SAWMMAIQYCDYPFDNHKVSFKDMRAALRQKRGQSLQFGALV 214 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-----HHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999999999999986005899999999---9-----999999997433666369999999999983402887777999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999988979999999999999999
Q gi|254780223|r 318 GGVRTMGLLGLFIGPVLMALIAVIW 342 (360)
Q Consensus 318 ~g~~l~G~~G~ilg~p~~a~~~~i~ 342 (360)
....+-=+.|.+.- |.+...-+++
T Consensus 215 ~l~~~IP~vnl~vm-P~AV~gaTll 238 (251)
T PRK04949 215 SLFTMIPLLNLVIM-PVAVCGATAM 238 (251)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHH
T ss_conf 99999799999999-8999999999
No 24
>TIGR01478 STEVOR variant surface antigen, stevor family; InterPro: IPR006374 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see . This entry represents the stevor (short for "subtelomeric variable open reading frame") family of predicted variant surface antigens. This is the third largest variant surface antigen family in P. falciparum, with 33 genes identified in the genome of this parasite . The function of these proteins is not known, but they are expressed during several stages of the parasite life-cycle and may play a variety of roles in parasite survival and infection ..
Probab=42.74 E-value=17 Score=14.00 Aligned_cols=130 Identities=10% Similarity=0.028 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99988887899999999999999998763399824799999999988311-45-69999999999972886999999999
Q gi|254780223|r 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GA-PISFTAVSIYLLIKGNIFNATCLFLW 284 (360)
Q Consensus 207 ~~~~~~~~~~g~~~~~~i~gi~~~i~~~i~Gvp~a~llgil~~i~~~IP~-~G-~i~~~~~~~~~~~~~~~~~~i~~~i~ 284 (360)
.++..-.-+.....-++....++.+....+|+-+|---|.=+... --|. .. -..-....+.++...+...+....+.
T Consensus 172 v~D~YL~nLK~gC~~Gvg~C~l~S~ll~~~Gi~aA~tAA~e~~~g-~~s~~i~~~~~~~l~g~nff~~~SlEsa~~t~~~ 250 (315)
T TIGR01478 172 VHDNYLKNLKKGCTAGVGTCALSSALLGLIGIAAAKTAAIEAIIG-SYSLDIANKCTKALAGINFFFLSSLESALKTAVG 250 (315)
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 414677411034510368988999999888899987999888876-3015788899999999999978899999987345
Q ss_pred HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999970245455665154688899999999999999889799999-9999999999999986200354
Q gi|254780223|r 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENK 353 (360)
Q Consensus 285 ~~~v~~~~~~il~P~l~g~~~~l~p~~vllsi~~g~~l~G~~G~ilg-~p~~a~~~~i~~~~~~~~~~~~ 353 (360)
.+.. +||... .-.-+.-.+...|++.|+..= ..+++++.+++..|.+.+|.+.
T Consensus 251 t~~~-----------lmga~~-----~~~~~a~~~~Stf~PyGIAAlVLi~L~V~LIiLYIWLYrRRK~S 304 (315)
T TIGR01478 251 TIVS-----------LMGAAD-----EAESAASAATSTFLPYGIAALVLIILTVVLIILYIWLYRRRKKS 304 (315)
T ss_pred HHHH-----------HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 7753-----------653246-----66557888887861358999999999999999988885640303
No 25
>pfam11696 DUF3292 Protein of unknown function (DUF3292). This eukaryotic family of proteins has no known function.
Probab=39.69 E-value=19 Score=13.70 Aligned_cols=32 Identities=13% Similarity=0.521 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999989999999
Q gi|254780223|r 20 ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI 52 (360)
Q Consensus 20 ~~~~l~~~~~~l~pi~~a~~la~ll~p~~~~l~ 52 (360)
+.++.|+ .+++.|.+.+.+++.+++|..+.+.
T Consensus 132 vYf~AWl-lD~l~P~~~~~Li~LI~~P~~R~~L 163 (641)
T pfam11696 132 VYFVAWL-LDLLVPTIFGFLITLVLWPPSRKYL 163 (641)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHEECCCHHHHC
T ss_conf 9999999-9889999999999970274213003
No 26
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.10 E-value=22 Score=13.35 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=27.9
Q ss_pred HHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 876339982479999999998-831145699999999999728869
Q gi|254780223|r 232 AYWLAGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIF 276 (360)
Q Consensus 232 ~~~i~Gvp~a~llgil~~i~~-~IP~~G~i~~~~~~~~~~~~~~~~ 276 (360)
.+++..-|++..-|+-+|.++ |.|+.|.=..+...+...+.+|..
T Consensus 36 iLrl~atphsvA~gvAaG~faaf~Pf~g~h~iiAa~La~~l~gNl~ 81 (184)
T COG3216 36 ILRLLATPHSVAAGVAAGVFAAFFPFFGLHMIIAAVLAIVLRGNLV 81 (184)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHH
T ss_conf 4552178258999999878887555321999999999999854189
No 27
>TIGR01625 YidE_YbjL_dupl YidE/YbjL duplication; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of E. coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport. .
Probab=35.78 E-value=22 Score=13.32 Aligned_cols=47 Identities=17% Similarity=0.090 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999999999999987633998247999999999883114569
Q gi|254780223|r 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260 (360)
Q Consensus 214 ~~~g~~~~~~i~gi~~~i~~~i~Gvp~a~llgil~~i~~~IP~~G~i 260 (360)
+-.+.++......+++++..+++++|++...|+++|-..==|..+..
T Consensus 89 ~~~~~l~~~~~~~~~~~~~~~ll~~~~~~~~G~~aGa~TntpaL~~~ 135 (165)
T TIGR01625 89 INAGALITVVPTLLVAVLLIKLLRIDYALTAGMLAGATTNTPALAAA 135 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999999999999996368667899982113488899999
No 28
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=35.07 E-value=22 Score=13.25 Aligned_cols=53 Identities=17% Similarity=0.090 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHH
Q ss_conf 999888878999999999999999987633998247999-99999988311456
Q gi|254780223|r 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG-VITAIMAMIPGGAP 259 (360)
Q Consensus 207 ~~~~~~~~~~g~~~~~~i~gi~~~i~~~i~Gvp~a~llg-il~~i~~~IP~~G~ 259 (360)
++-.+++-++-+.+.++..+...-..+-.+-.+.....| +++-+-+.+=..|.
T Consensus 118 VGP~vg~el~~~ai~Av~~Al~~I~iYI~iRF~~~fav~AiiAL~HDvli~lg~ 171 (294)
T PRK13022 118 VGPQVGKELAQKGLLALLVALIGILIYIAFRFEWRFALGAIIALLHDVIITLGI 171 (294)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 892289999999999999999999999999971421799999999999999999
No 29
>PRK10459 colanic acid exporter; Provisional
Probab=34.65 E-value=23 Score=13.20 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHCCCC
Q ss_conf 9999999999999899----99999831888
Q gi|254780223|r 32 APVLSALIIGFTSWPI----YSSFISKKEES 58 (360)
Q Consensus 32 ~pi~~a~~la~ll~p~----~~~l~~~~~~~ 58 (360)
.+++....+++.++|. ...++|+.+.+
T Consensus 112 ~~ll~~l~l~~~i~~~~~~~~a~l~r~l~Fk 142 (492)
T PRK10459 112 APLIKTLSLAFVIIPIGQQFRYLLQKDLEFN 142 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999998899999999985329
No 30
>PRK13954 mscL large-conductance mechanosensitive channel; Provisional
Probab=32.76 E-value=24 Score=13.01 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9866789998997522889899999995000231579999999999888
Q gi|254780223|r 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212 (360)
Q Consensus 164 ~~~~~i~~~~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 212 (360)
+.++++.-+..|++.+-.++..+.-..--++ ..+...++..++++.++
T Consensus 70 vInFlIiA~viF~~Vk~~n~~~~~~~~~~~~-~~~~~~~LL~EIRDlL~ 117 (120)
T PRK13954 70 VIDFIIIAFALFIFVKIANTLMKKEEAEEEA-VVEENVVLLTEIRDLLR 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHHHHHH
T ss_conf 9999999999999999999987245789999-98806689999999998
No 31
>TIGR00966 3a0501s07 protein-export membrane protein SecF; InterPro: IPR005665 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component. . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion . Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains . Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. This family consists of various prokaryotic SecF protein export membrane proteins. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of Escherichia coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps . Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters . ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=32.59 E-value=24 Score=13.08 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9899999995000231579999999999888878999
Q gi|254780223|r 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218 (360)
Q Consensus 182 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~ 218 (360)
||+|+.++++-..+..+..+-+..-+++++.|-+...
T Consensus 226 DR~REn~~~~~k~~~~~~~~~~n~SinqTL~RTi~Ts 262 (307)
T TIGR00966 226 DRIRENLRGFQKYKRKTLTEVINLSINQTLSRTILTS 262 (307)
T ss_pred ECCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
T ss_conf 0305555543146798999997466314021124888
No 32
>COG4658 RnfD Predicted NADH:ubiquinone oxidoreductase, subunit RnfD [Energy production and conversion]
Probab=31.71 E-value=25 Score=12.90 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999999999899999998318
Q gi|254780223|r 24 LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56 (360)
Q Consensus 24 l~~~~~~l~pi~~a~~la~ll~p~~~~l~~~~~ 56 (360)
.++...-+.-+.++.+.|..++-.+.++.||..
T Consensus 36 yffG~g~L~~~~la~~~a~~~E~~~~~lrk~~~ 68 (338)
T COG4658 36 YFFGFGTLIQIALAILVALLLEALVLKLRKKSV 68 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 875699999999999999999999999964684
No 33
>pfam03323 GerA Bacillus/Clostridium GerA spore germination protein.
Probab=31.05 E-value=26 Score=12.83 Aligned_cols=103 Identities=14% Similarity=0.137 Sum_probs=51.7
Q ss_pred HHCCCCHHHHHHHHHHHHHH---------HH-HHHHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHHHHHCCCEEEEE-
Q ss_conf 63399824799999999988---------31-1456999999999---9972886999999999999999702454556-
Q gi|254780223|r 234 WLAGVPSHVALGVITAIMAM---------IP-GGAPISFTAVSIY---LLIKGNIFNATCLFLWGAIELFIVDKTLRPF- 299 (360)
Q Consensus 234 ~i~Gvp~a~llgil~~i~~~---------IP-~~G~i~~~~~~~~---~~~~~~~~~~i~~~i~~~~v~~~~~~il~P~- 299 (360)
.=-|+|+|.++-.+...+.+ .| -+|..++++-+++ ++.+-|......+++..+. ...++..|-
T Consensus 314 sR~~vPfP~~iE~llme~~~EllREAgiRlP~~iGqtisIVGgLVIGqAAV~AglvS~~~vIvvAlt---aIasF~iP~y 390 (468)
T pfam03323 314 SREGVPFPPIIEALIMEITFELLREAGIRLPSPIGQTIGIVGGLVIGQAAVEAGLVSPIMVIVVALT---AIASFTIPSY 390 (468)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHH---HHHHCCCCCH
T ss_conf 5358988889999999999999999864087023447889999886798998366777324433198---8872247546
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65154688899999999999999889799999999999999999
Q gi|254780223|r 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343 (360)
Q Consensus 300 l~g~~~~l~p~~vllsi~~g~~l~G~~G~ilg~p~~a~~~~i~~ 343 (360)
=++.+. -..=+.+++.+.+||..|+++|..+...-..-.|
T Consensus 391 ~l~~~i----rilRf~~lila~~~Gl~Gi~~g~~~ll~~L~sl~ 430 (468)
T pfam03323 391 ELSIAI----RLLRFPLLILAALFGLYGIILGLLLLLIHLASLK 430 (468)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 788899----9999999999999716799999999999998187
No 34
>pfam04281 Tom22 Mitochondrial import receptor subunit Tom22. The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins. The N terminal region of Tom22 has been shown to have chaperone-like activity, and the C terminal region faces the intermembrane face.
Probab=31.01 E-value=26 Score=12.83 Aligned_cols=55 Identities=16% Similarity=0.077 Sum_probs=23.7
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99995000231579999999999888878999999999999999987633998247999
Q gi|254780223|r 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245 (360)
Q Consensus 187 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~gi~~~i~~~i~Gvp~a~llg 245 (360)
.++.++|+..|.+.........+.+++.+ .-+-=..=..+....++|||.++.+.
T Consensus 58 ALkDIiPP~~R~~is~~~stt~s~~ks~~----~~~Gk~lW~vtTSALLlGVP~aLa~~ 112 (136)
T pfam04281 58 ALKDIVPPTTRRKISSKVSTTTSFFKSGF----SFGGKLLWVVTTSALLLGVPLALAIL 112 (136)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98402885777899999899999999999----85460267979989999879999999
No 35
>KOG0569 consensus
Probab=30.05 E-value=27 Score=12.73 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 8889999999999999988979----99999999999999999986200354210027
Q gi|254780223|r 306 KLPFLPTFFGLVGGVRTMGLLG----LFIGPVLMALIAVIWKESIMAIKENKEKISSN 359 (360)
Q Consensus 306 ~l~p~~vllsi~~g~~l~G~~G----~ilg~p~~a~~~~i~~~~~~~~~~~~~~~~~~ 359 (360)
-.|....++..+....+...+| ++...|.+....-+|+.-.+.+.++.+++.++
T Consensus 411 ~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~y~~lPETkgr~~~eI~~~ 468 (485)
T KOG0569 411 AVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEE 468 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 9999999999998999998734365389899999999999995967699998999999
No 36
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=29.56 E-value=28 Score=12.68 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q ss_conf 9999889799999999999999-----999998620
Q gi|254780223|r 319 GVRTMGLLGLFIGPVLMALIAV-----IWKESIMAI 349 (360)
Q Consensus 319 g~~l~G~~G~ilg~p~~a~~~~-----i~~~~~~~~ 349 (360)
...-+|..|.=+|-++.-.... .||.++++.
T Consensus 400 ~~~~lG~~GiW~a~~i~~~~r~i~l~~~~rr~~r~g 435 (439)
T PRK10367 400 TLPWLGNHGLWLALTVFLALRGLSLAAIWRRHWRNG 435 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999875889999999999999999999999980479
No 37
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=29.32 E-value=28 Score=12.65 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCC
Q ss_conf 15799999999998888789999999-9999999998763399
Q gi|254780223|r 197 PAYWKKISRIVPKVIRSTFLGMTIIA-IGEGLVLGSAYWLAGV 238 (360)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~i~gi~~~i~~~i~Gv 238 (360)
..+..++.++-++.++..+.|.-+++ +..++.+.+++...|-
T Consensus 45 Akrv~kLL~k~drlig~iLIGNNLvNilasalaT~~~irl~Gd 87 (423)
T COG4536 45 AKRVEKLLEKPDRLIGTILIGNNLVNILASALATILGIRLYGD 87 (423)
T ss_pred HHHHHHHHCCCHHEEEEEEECCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 6889998658610466656644089988999999999997153
No 38
>pfam07423 DUF1510 Protein of unknown function (DUF1510). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=28.43 E-value=29 Score=12.55 Aligned_cols=15 Identities=13% Similarity=0.146 Sum_probs=5.3
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 188805999999999
Q gi|254780223|r 55 KEESSTFLAVIATVS 69 (360)
Q Consensus 55 ~~~~~~~~a~l~~i~ 69 (360)
++.++.+...+.+++
T Consensus 10 Rk~n~vLNiaI~iV~ 24 (214)
T pfam07423 10 RKINRVLNIAIGIVV 24 (214)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 645345579999999
No 39
>PRK10381 ferric enterobactin transport protein FepE; Provisional
Probab=28.41 E-value=29 Score=12.55 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8897999999999999999999986200354
Q gi|254780223|r 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353 (360)
Q Consensus 323 ~G~~G~ilg~p~~a~~~~i~~~~~~~~~~~~ 353 (360)
+++.|.++| +..++.|...+.+++++
T Consensus 345 ~~llGgmlg-----~~~VLiR~a~r~rk~~~ 370 (379)
T PRK10381 345 SALIGGMVA-----CGGVLLRHAMRSRKREQ 370 (379)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_conf 999999999-----99999999999878988
No 40
>pfam01146 Caveolin Caveolin. All three known Caveolin forms have the FEDVIAEP caveolin 'signature motif' within their hydrophilic N-terminal domain. Caveolin 2 (Cav-2) is co-localized and co-expressed with Cav-1/VIP21, forms heterodimers with it and needs Cav-1 for proper membrane localisation. Cav-3 has greater protein sequence similarity to Cav-1 than to Cav-2. Cellular processes caveolins are involved in include vesicular transport, cholesterol homeostasis, signal transduction, and tumour suppression.
Probab=26.35 E-value=31 Score=12.32 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=19.3
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9876339982479999999998831
Q gi|254780223|r 231 SAYWLAGVPSHVALGVITAIMAMIP 255 (360)
Q Consensus 231 i~~~i~Gvp~a~llgil~~i~~~IP 255 (360)
+.-.++|+|.|++||++-+++++.-
T Consensus 73 ~Ls~l~aiP~A~~~Gi~FA~ls~~h 97 (148)
T pfam01146 73 LLTALLAIPLAFVWGILFALLSCLH 97 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999878
No 41
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=26.11 E-value=32 Score=12.29 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99998999999983
Q gi|254780223|r 41 GFTSWPIYSSFISK 54 (360)
Q Consensus 41 a~ll~p~~~~l~~~ 54 (360)
.|+..|+.+.+.+|
T Consensus 35 kf~~~pi~~~Ld~R 48 (173)
T PRK13460 35 KFAWDVILKALDER 48 (173)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99688899999999
No 42
>pfam08006 DUF1700 Protein of unknown function (DUF1700). This family contains many hypothetical bacterial proteins and two putative membrane proteins.
Probab=25.77 E-value=32 Score=12.26 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999988979999999999999999999862
Q gi|254780223|r 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348 (360)
Q Consensus 313 llsi~~g~~l~G~~G~ilg~p~~a~~~~i~~~~~~~ 348 (360)
...++++...+|. |+++++....+.+-++|-..+.
T Consensus 137 ~~~~f~~i~~~Gl-Glll~~~~~~l~k~~~~l~i~y 171 (181)
T pfam08006 137 IFNVFFSIGLFGL-GLLLAIVMYYLTKLLYRLLVKY 171 (181)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999-9999999999999999999999
No 43
>TIGR00915 2A0602 RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; InterPro: IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 is involved in toxin production and resistance processes.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=24.86 E-value=34 Score=12.15 Aligned_cols=84 Identities=10% Similarity=0.087 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHH-----HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999866789998997522889899-----9999950002315799999999998888789999999999999999
Q gi|254780223|r 157 GMIFLDYCLSIIFMIIALFFFYRDGFSIS-----QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231 (360)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~l~~~~~~~-----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~gi~~~i 231 (360)
.+-..+.+..+++++=+|--+|+..++-. ..+.-|+++......+++-+.+.+.+++-.+-..+=.++ ..+.
T Consensus 478 ~am~LSvlvALilTPALCAt~LK~~~kg~h~~~k~GFFgWFNr~F~~~~~~Y~~~V~~~l~~~~r~l~~Y~ll---~~g~ 554 (1058)
T TIGR00915 478 SAMALSVLVALILTPALCATMLKPIEKGEHHEKKGGFFGWFNRMFDRSTNGYENVVGKILKRRLRYLLVYVLL---VGGM 554 (1058)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH---HHHH
T ss_conf 9999999999984588899871566678870004564136777665532012268999860575043567778---9857
Q ss_pred HHHHCCCCHHHH
Q ss_conf 876339982479
Q gi|254780223|r 232 AYWLAGVPSHVA 243 (360)
Q Consensus 232 ~~~i~Gvp~a~l 243 (360)
.+....+|-+++
T Consensus 555 ~~Lf~r~PtsFL 566 (1058)
T TIGR00915 555 VFLFVRLPTSFL 566 (1058)
T ss_pred HHHEEECCCCCC
T ss_conf 642000774448
No 44
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=24.07 E-value=35 Score=12.06 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 88878999999999999999987633998247999999999-88311456
Q gi|254780223|r 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM-AMIPGGAP 259 (360)
Q Consensus 211 ~~~~~~g~~~~~~i~gi~~~i~~~i~Gvp~a~llgil~~i~-~~IP~~G~ 259 (360)
+++=++-..+.+++.++.+-+.+-.+..+..+.+|.+++++ +.+=+.|.
T Consensus 1230 Ig~ELr~nAIIAVliALIaILLYI~fRFeW~FALgAVVALlHDVLITLGV 1279 (1405)
T PRK12911 1230 LSNKMRTQATIALFGALAIILLYVSLRFEWRYAFSAICALIHDLLATCAV 1279 (1405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999996999999999999999998876432999999999899998899
No 45
>pfam07869 DUF1656 Protein of unknown function (DUF1656). This family contains bacterial proteins, many of which are hypothetical. Some proteins in this family are putative membrane proteins.
Probab=23.91 E-value=35 Score=12.04 Aligned_cols=30 Identities=10% Similarity=0.246 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999999899999998318880
Q gi|254780223|r 30 FFAPVLSALIIGFTSWPIYSSFISKKEESS 59 (360)
Q Consensus 30 ~l~pi~~a~~la~ll~p~~~~l~~~~~~~~ 59 (360)
++.|++....+|+++.-+.+++.+|.+..|
T Consensus 9 y~ppll~~~~la~~l~~~~~~lL~r~g~yr 38 (58)
T pfam07869 9 YFPPLLLVALLALLLTWLLRRLLARLGLYR 38 (58)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 436999999999999999999996545452
No 46
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=23.79 E-value=35 Score=12.02 Aligned_cols=20 Identities=15% Similarity=0.013 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999989999999831
Q gi|254780223|r 36 SALIIGFTSWPIYSSFISKK 55 (360)
Q Consensus 36 ~a~~la~ll~p~~~~l~~~~ 55 (360)
+.++-.|+..|+.+.+.+|.
T Consensus 19 ~~il~kf~~~pi~~~l~~R~ 38 (159)
T PRK13461 19 LLILKHFFFDKIKAVIDSRQ 38 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999997888999999999
No 47
>PRK01766 multidrug efflux protein; Reviewed
Probab=22.45 E-value=37 Score=11.86 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8897999999999999999999986
Q gi|254780223|r 323 MGLLGLFIGPVLMALIAVIWKESIM 347 (360)
Q Consensus 323 ~G~~G~ilg~p~~a~~~~i~~~~~~ 347 (360)
+|..|.-+|.++.-.+..+.-.|..
T Consensus 412 ~G~~GiW~~~~~~~~~~~~~~~~r~ 436 (452)
T PRK01766 412 MGPFGFWIGLIIGLTAAAILLLLRL 436 (452)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8757899999999999999999999
No 48
>TIGR02380 ECA_wecA undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; InterPro: IPR012750 Members of this family are the WecA enzymes of enterobacterial common antigen (ECA) biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyse the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown to be critical to enzymatic activity for WecA is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyse the same reaction as WecA. ; GO: 0000287 magnesium ion binding, 0016780 phosphotransferase activity for other substituted phosphate groups, 0030145 manganese ion binding, 0009103 lipopolysaccharide biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=21.29 E-value=39 Score=11.71 Aligned_cols=43 Identities=12% Similarity=0.069 Sum_probs=27.1
Q ss_pred ECCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 515468-8899999999999999889799999999999999999998620035421002
Q gi|254780223|r 301 VGGPIK-LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358 (360)
Q Consensus 301 ~g~~~~-l~p~~vllsi~~g~~l~G~~G~ilg~p~~a~~~~i~~~~~~~~~~~~~~~~~ 358 (360)
+|++-- +||++-+ | ++|.|++=.+...+|.- ++++.+-+|.+|
T Consensus 233 Qg~~~p~~~PVTAL-----W---------lIA~PLmDM~aIm~RR~-rkG~SPFkPDR~ 276 (349)
T TIGR02380 233 QGESSPSMRPVTAL-----W---------LIALPLMDMAAIMLRRI-RKGDSPFKPDRE 276 (349)
T ss_pred CCCCCCCCCCHHHH-----H---------HHHHHHHHHHHHHHHHH-HCCCCCCCCCHH
T ss_conf 13665788740579-----9---------98614777999999874-277776977735
No 49
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=20.43 E-value=41 Score=11.60 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9999999998763399824799999
Q gi|254780223|r 223 IGEGLVLGSAYWLAGVPSHVALGVI 247 (360)
Q Consensus 223 ~i~gi~~~i~~~i~Gvp~a~llgil 247 (360)
++..+...+.+..+|++-.-+++.+
T Consensus 76 ~i~~~~ii~~L~~lGi~~tsl~A~~ 100 (285)
T PRK10334 76 GIIAFTLIAALGRVGVQTASVIAVL 100 (285)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 9999999999998298779999999
Done!