Query         gi|254780223|ref|YP_003064636.1| ABC transporter permease [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 360
No_of_seqs    130 out of 4487
Neff          9.4 
Searched_HMMs 33803
Date          Mon May 23 21:34:07 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780223.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2w2e_A Aquaporin; yeast, gati  46.9      13 0.00037   14.4   5.5   57  303-359   219-276 (279)
  2 >2b6o_A Aquaporin-0, lens fibe  34.6      20 0.00058   13.2   2.4   55  303-357   179-233 (263)
  3 >2jwa_A Receptor tyrosine-prot  26.9      26 0.00078   12.4   4.1   29  305-333     6-34  (44)
  4 >1iij_A ERBB-2 receptor protei  18.0      40  0.0012   11.3   1.4   24  308-331     5-28  (35)
  5 >1kkx_A Transcription regulato  15.4      46  0.0014   10.9   1.4   51  301-351     2-58  (81)
  6 >1j4n_A Aquaporin 1; membrane   11.2      61  0.0018   10.1   1.5   45  304-348   190-234 (271)
  7 >2zz9_A Aquaporin-4; water tra  11.1      62  0.0018   10.1   2.4   45  304-348   187-231 (301)
  8 >3c02_A Aquaglyceroporin; memb   9.9      71  0.0021    9.7   2.3   52  304-355   189-250 (258)
  9 >2vv5_A MSCS, small-conductanc   8.9      82  0.0024    9.3   6.9   26  222-247    75-100 (110)
 10 >2wq7_A RE11660P; lyase-DNA co   8.7      84  0.0025    9.2   0.5   18  333-350    59-76  (89)

No 1  
>>2w2e_A Aquaporin; yeast, gating, membrane protein; HET: BOG; 1.15A {Pichia pastoris} PDB: 2w1p_A* (A:)
Probab=46.86  E-value=13  Score=14.39  Aligned_cols=57  Identities=14%  Similarity=0.011  Sum_probs=43.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             54688899999999999999-8897999999999999999999986200354210027
Q gi|254780223|r  303 GPIKLPFLPTFFGLVGGVRT-MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN  359 (360)
Q Consensus       303 ~~~~l~p~~vllsi~~g~~l-~G~~G~ilg~p~~a~~~~i~~~~~~~~~~~~~~~~~~  359 (360)
                      ....+||.-.+-.-++.+.. ...|--.+||.+.+++.++..++.....+++++.+++
T Consensus       219 tg~~~NPAr~~g~~l~~~~~~~~~wvy~v~P~~Ga~la~~~~~~~~~~~~~~~~~~~~  276 (279)
T 2w2e_A          219 TGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLNYQTTNPGQD  276 (279)
T ss_dssp             HCCCCSHHHHHHHHHHHTCCCTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCSCC---
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             6761477886599998076645704566798999999999999998647888999988


No 2  
>>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interactions, membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} (A:)
Probab=34.62  E-value=20  Score=13.20  Aligned_cols=55  Identities=9%  Similarity=0.021  Sum_probs=42.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             5468889999999999999988979999999999999999999862003542100
Q gi|254780223|r  303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS  357 (360)
Q Consensus       303 ~~~~l~p~~vllsi~~g~~l~G~~G~ilg~p~~a~~~~i~~~~~~~~~~~~~~~~  357 (360)
                      .+..+||.-.+-.-++++.....|=-.+||.+.+++.++..++....++++++.+
T Consensus       179 tg~~~NPAr~~g~~i~~~~~~~~wVy~~gP~~Ga~la~~l~~~~~~~~~~~~~~~  233 (263)
T 2b6o_A          179 TGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKSVSER  233 (263)
T ss_dssp             STTCCCHHHHHHHHHHHTCCTTCTHHHHHHHHHHHHHHHHHHTTTSCCSSCHHHH
T ss_pred             CCHHCCCHHCCCHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf             7310351111421353589766430024889999999999999753888763356


No 3  
>>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} (A:)
Probab=26.94  E-value=26  Score=12.39  Aligned_cols=29  Identities=21%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             68889999999999999988979999999
Q gi|254780223|r  305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPV  333 (360)
Q Consensus       305 ~~l~p~~vllsi~~g~~l~G~~G~ilg~p  333 (360)
                      .+-+|+..+++-..|..++=+.|.++|..
T Consensus         6 qraspvtsiia~vvgill~~v~g~v~gil   34 (44)
T 2jwa_A            6 QRASPLTSIISAVVGILLVVVLGVVFGIL   34 (44)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             42580899999999999999999999999


No 4  
>>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} (A:)
Probab=18.02  E-value=40  Score=11.26  Aligned_cols=24  Identities=21%  Similarity=0.229  Sum_probs=11.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899999999999999889799999
Q gi|254780223|r  308 PFLPTFFGLVGGVRTMGLLGLFIG  331 (360)
Q Consensus       308 ~p~~vllsi~~g~~l~G~~G~ilg  331 (360)
                      +|+..+++-..|..++=+.|..+|
T Consensus         5 spvtsiia~vvgill~~v~g~v~g   28 (35)
T 1iij_A            5 SPVTFIIATVVGVLLFLILVVVVG   28 (35)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             CCEEEEHHHHHHHHHHHHHHHHHH
T ss_conf             865685999999999999999988


No 5  
>>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} (A:43-123)
Probab=15.36  E-value=46  Score=10.86  Aligned_cols=51  Identities=12%  Similarity=0.157  Sum_probs=37.9

Q ss_pred             ECCCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             51546888999999999999------9988979999999999999999999862003
Q gi|254780223|r  301 VGGPIKLPFLPTFFGLVGGV------RTMGLLGLFIGPVLMALIAVIWKESIMAIKE  351 (360)
Q Consensus       301 ~g~~~~l~p~~vllsi~~g~------~l~G~~G~ilg~p~~a~~~~i~~~~~~~~~~  351 (360)
                      -|+.+|++-+...+.-.+|-      ..|.-++--+|.|...-++..+..+...+++
T Consensus         2 ~gk~idL~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~lk~~Y~k~L~~fE~   58 (81)
T 1kkx_A            2 GNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER   58 (81)
T ss_dssp             SSSSCCTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCEECCHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             996676999999999973989872626599999998878789999999999999999


No 6  
>>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} (A:)
Probab=11.21  E-value=61  Score=10.09  Aligned_cols=45  Identities=20%  Similarity=0.149  Sum_probs=33.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             468889999999999999988979999999999999999999862
Q gi|254780223|r  304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA  348 (360)
Q Consensus       304 ~~~l~p~~vllsi~~g~~l~G~~G~ilg~p~~a~~~~i~~~~~~~  348 (360)
                      .-.+||.-.+---++++.....+=-.+||.+.+.+.++...+...
T Consensus       190 g~~~NPAr~~g~~~~~~~~~~~wVy~~aP~~Ga~la~~~y~~~~~  234 (271)
T 1j4n_A          190 GCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILA  234 (271)
T ss_dssp             CCCCCHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             CCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC
T ss_conf             886670431069886447667432324889999999999999728


No 7  
>>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A (A:)
Probab=11.08  E-value=62  Score=10.07  Aligned_cols=45  Identities=16%  Similarity=0.055  Sum_probs=27.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             468889999999999999988979999999999999999999862
Q gi|254780223|r  304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA  348 (360)
Q Consensus       304 ~~~l~p~~vllsi~~g~~l~G~~G~ilg~p~~a~~~~i~~~~~~~  348 (360)
                      ...+||.-.+-.-++.+.....|--.+||.+-+++-++..++...
T Consensus       187 G~~~NPAr~~gp~l~~~~~~~~wVywvgP~~Ga~la~~ly~~~~~  231 (301)
T 2zz9_A          187 GASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFC  231 (301)
T ss_dssp             CCCCCHHHHHHHHHHHCCCTTTTHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             650268886399998047778751435989999999999999966


No 8  
>>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} (A:)
Probab=9.91  E-value=71  Score=9.69  Aligned_cols=52  Identities=4%  Similarity=-0.013  Sum_probs=20.1

Q ss_pred             CCCCCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             468889999999999999----------9889799999999999999999998620035421
Q gi|254780223|r  304 PIKLPFLPTFFGLVGGVR----------TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK  355 (360)
Q Consensus       304 ~~~l~p~~vllsi~~g~~----------l~G~~G~ilg~p~~a~~~~i~~~~~~~~~~~~~~  355 (360)
                      ...+||.-.+-.-+....          ..-.+=-.+||.+.+++-++..++......++++
T Consensus       189 G~~~NPAr~~g~~l~~~~~~~~~~~~~~~~~~wVy~v~P~~Ga~la~~~y~~~~~~~~~~~~  250 (258)
T 3c02_A          189 GFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVICPLVDLAN  250 (258)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHC-
T ss_pred             CCEECHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             64614888668999998603565567787076699999999999999999999688766566


No 9  
>>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane structure, membrane protein, membrane; 3.45A {Escherichia coli} (A:1-110)
Probab=8.92  E-value=82  Score=9.31  Aligned_cols=26  Identities=19%  Similarity=0.061  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             99999999998763399824799999
Q gi|254780223|r  222 AIGEGLVLGSAYWLAGVPSHVALGVI  247 (360)
Q Consensus       222 ~~i~gi~~~i~~~i~Gvp~a~llgil  247 (360)
                      ..+..+...+.+..+|+|-..+.+..
T Consensus        75 ~~i~~~~~~~~L~~~Gi~~s~lla~~  100 (110)
T 2vv5_A           75 YGIIAFTLIAALGRVGVQTASVIAVL  100 (110)
T ss_dssp             HHHHHHHHHHHHHTTTCCSTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999986455468899999


No 10 
>>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* (A:164-219,A:314-346)
Probab=8.73  E-value=84  Score=9.23  Aligned_cols=18  Identities=11%  Similarity=0.370  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999986200
Q gi|254780223|r  333 VLMALIAVIWKESIMAIK  350 (360)
Q Consensus       333 p~~a~~~~i~~~~~~~~~  350 (360)
                      |+.-.-+.+|||+.....
T Consensus        59 P~sl~gQllWREffyt~a   76 (89)
T 2wq7_A           59 PVSLIGQLMWREFYYTVA   76 (89)
T ss_dssp             TTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             699999999999999999


Done!