Query gi|254780223|ref|YP_003064636.1| ABC transporter permease [Candidatus Liberibacter asiaticus str. psy62] Match_columns 360 No_of_seqs 130 out of 4487 Neff 9.4 Searched_HMMs 33803 Date Mon May 23 21:34:07 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780223.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2w2e_A Aquaporin; yeast, gati 46.9 13 0.00037 14.4 5.5 57 303-359 219-276 (279) 2 >2b6o_A Aquaporin-0, lens fibe 34.6 20 0.00058 13.2 2.4 55 303-357 179-233 (263) 3 >2jwa_A Receptor tyrosine-prot 26.9 26 0.00078 12.4 4.1 29 305-333 6-34 (44) 4 >1iij_A ERBB-2 receptor protei 18.0 40 0.0012 11.3 1.4 24 308-331 5-28 (35) 5 >1kkx_A Transcription regulato 15.4 46 0.0014 10.9 1.4 51 301-351 2-58 (81) 6 >1j4n_A Aquaporin 1; membrane 11.2 61 0.0018 10.1 1.5 45 304-348 190-234 (271) 7 >2zz9_A Aquaporin-4; water tra 11.1 62 0.0018 10.1 2.4 45 304-348 187-231 (301) 8 >3c02_A Aquaglyceroporin; memb 9.9 71 0.0021 9.7 2.3 52 304-355 189-250 (258) 9 >2vv5_A MSCS, small-conductanc 8.9 82 0.0024 9.3 6.9 26 222-247 75-100 (110) 10 >2wq7_A RE11660P; lyase-DNA co 8.7 84 0.0025 9.2 0.5 18 333-350 59-76 (89) No 1 >>2w2e_A Aquaporin; yeast, gating, membrane protein; HET: BOG; 1.15A {Pichia pastoris} PDB: 2w1p_A* (A:) Probab=46.86 E-value=13 Score=14.39 Aligned_cols=57 Identities=14% Similarity=0.011 Sum_probs=43.6 Q ss_pred CCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 54688899999999999999-8897999999999999999999986200354210027 Q gi|254780223|r 303 GPIKLPFLPTFFGLVGGVRT-MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359 (360) Q Consensus 303 ~~~~l~p~~vllsi~~g~~l-~G~~G~ilg~p~~a~~~~i~~~~~~~~~~~~~~~~~~ 359 (360) ....+||.-.+-.-++.+.. ...|--.+||.+.+++.++..++.....+++++.+++ T Consensus 219 tg~~~NPAr~~g~~l~~~~~~~~~wvy~v~P~~Ga~la~~~~~~~~~~~~~~~~~~~~ 276 (279) T 2w2e_A 219 TGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLNYQTTNPGQD 276 (279) T ss_dssp HCCCCSHHHHHHHHHHHTCCCTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCSCC--- T ss_pred CCCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 6761477886599998076645704566798999999999999998647888999988 No 2 >>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interactions, membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} (A:) Probab=34.62 E-value=20 Score=13.20 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=42.4 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 5468889999999999999988979999999999999999999862003542100 Q gi|254780223|r 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357 (360) Q Consensus 303 ~~~~l~p~~vllsi~~g~~l~G~~G~ilg~p~~a~~~~i~~~~~~~~~~~~~~~~ 357 (360) .+..+||.-.+-.-++++.....|=-.+||.+.+++.++..++....++++++.+ T Consensus 179 tg~~~NPAr~~g~~i~~~~~~~~wVy~~gP~~Ga~la~~l~~~~~~~~~~~~~~~ 233 (263) T 2b6o_A 179 TGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKSVSER 233 (263) T ss_dssp STTCCCHHHHHHHHHHHTCCTTCTHHHHHHHHHHHHHHHHHHTTTSCCSSCHHHH T ss_pred CCHHCCCHHCCCHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHH T ss_conf 7310351111421353589766430024889999999999999753888763356 No 3 >>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} (A:) Probab=26.94 E-value=26 Score=12.39 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=21.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 68889999999999999988979999999 Q gi|254780223|r 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333 (360) Q Consensus 305 ~~l~p~~vllsi~~g~~l~G~~G~ilg~p 333 (360) .+-+|+..+++-..|..++=+.|.++|.. T Consensus 6 qraspvtsiia~vvgill~~v~g~v~gil 34 (44) T 2jwa_A 6 QRASPLTSIISAVVGILLVVVLGVVFGIL 34 (44) T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 42580899999999999999999999999 No 4 >>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} (A:) Probab=18.02 E-value=40 Score=11.26 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=11.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999999999999889799999 Q gi|254780223|r 308 PFLPTFFGLVGGVRTMGLLGLFIG 331 (360) Q Consensus 308 ~p~~vllsi~~g~~l~G~~G~ilg 331 (360) +|+..+++-..|..++=+.|..+| T Consensus 5 spvtsiia~vvgill~~v~g~v~g 28 (35) T 1iij_A 5 SPVTFIIATVVGVLLFLILVVVVG 28 (35) T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTT T ss_pred CCEEEEHHHHHHHHHHHHHHHHHH T ss_conf 865685999999999999999988 No 5 >>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} (A:43-123) Probab=15.36 E-value=46 Score=10.86 Aligned_cols=51 Identities=12% Similarity=0.157 Sum_probs=37.9 Q ss_pred ECCCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 51546888999999999999------9988979999999999999999999862003 Q gi|254780223|r 301 VGGPIKLPFLPTFFGLVGGV------RTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351 (360) Q Consensus 301 ~g~~~~l~p~~vllsi~~g~------~l~G~~G~ilg~p~~a~~~~i~~~~~~~~~~ 351 (360) -|+.+|++-+...+.-.+|- ..|.-++--+|.|...-++..+..+...+++ T Consensus 2 ~gk~idL~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~lk~~Y~k~L~~fE~ 58 (81) T 1kkx_A 2 GNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 58 (81) T ss_dssp SSSSCCTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH T ss_pred CCEECCHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 996676999999999973989872626599999998878789999999999999999 No 6 >>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} (A:) Probab=11.21 E-value=61 Score=10.09 Aligned_cols=45 Identities=20% Similarity=0.149 Sum_probs=33.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 468889999999999999988979999999999999999999862 Q gi|254780223|r 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348 (360) Q Consensus 304 ~~~l~p~~vllsi~~g~~l~G~~G~ilg~p~~a~~~~i~~~~~~~ 348 (360) .-.+||.-.+---++++.....+=-.+||.+.+.+.++...+... T Consensus 190 g~~~NPAr~~g~~~~~~~~~~~wVy~~aP~~Ga~la~~~y~~~~~ 234 (271) T 1j4n_A 190 GCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILA 234 (271) T ss_dssp CCCCCHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHTTTS T ss_pred CCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCC T ss_conf 886670431069886447667432324889999999999999728 No 7 >>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A (A:) Probab=11.08 E-value=62 Score=10.07 Aligned_cols=45 Identities=16% Similarity=0.055 Sum_probs=27.2 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 468889999999999999988979999999999999999999862 Q gi|254780223|r 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348 (360) Q Consensus 304 ~~~l~p~~vllsi~~g~~l~G~~G~ilg~p~~a~~~~i~~~~~~~ 348 (360) ...+||.-.+-.-++.+.....|--.+||.+-+++-++..++... T Consensus 187 G~~~NPAr~~gp~l~~~~~~~~wVywvgP~~Ga~la~~ly~~~~~ 231 (301) T 2zz9_A 187 GASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFC 231 (301) T ss_dssp CCCCCHHHHHHHHHHHCCCTTTTHHHHHHHHHHHHHHHHHHTTTC T ss_pred CCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHC T ss_conf 650268886399998047778751435989999999999999966 No 8 >>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} (A:) Probab=9.91 E-value=71 Score=9.69 Aligned_cols=52 Identities=4% Similarity=-0.013 Sum_probs=20.1 Q ss_pred CCCCCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 468889999999999999----------9889799999999999999999998620035421 Q gi|254780223|r 304 PIKLPFLPTFFGLVGGVR----------TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355 (360) Q Consensus 304 ~~~l~p~~vllsi~~g~~----------l~G~~G~ilg~p~~a~~~~i~~~~~~~~~~~~~~ 355 (360) ...+||.-.+-.-+.... ..-.+=-.+||.+.+++-++..++......++++ T Consensus 189 G~~~NPAr~~g~~l~~~~~~~~~~~~~~~~~~wVy~v~P~~Ga~la~~~y~~~~~~~~~~~~ 250 (258) T 3c02_A 189 GFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVICPLVDLAN 250 (258) T ss_dssp CCCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHC- T ss_pred CCEECHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 64614888668999998603565567787076699999999999999999999688766566 No 9 >>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane structure, membrane protein, membrane; 3.45A {Escherichia coli} (A:1-110) Probab=8.92 E-value=82 Score=9.31 Aligned_cols=26 Identities=19% Similarity=0.061 Sum_probs=15.6 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 99999999998763399824799999 Q gi|254780223|r 222 AIGEGLVLGSAYWLAGVPSHVALGVI 247 (360) Q Consensus 222 ~~i~gi~~~i~~~i~Gvp~a~llgil 247 (360) ..+..+...+.+..+|+|-..+.+.. T Consensus 75 ~~i~~~~~~~~L~~~Gi~~s~lla~~ 100 (110) T 2vv5_A 75 YGIIAFTLIAALGRVGVQTASVIAVL 100 (110) T ss_dssp HHHHHHHHHHHHHTTTCCSTTHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999986455468899999 No 10 >>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* (A:164-219,A:314-346) Probab=8.73 E-value=84 Score=9.23 Aligned_cols=18 Identities=11% Similarity=0.370 Sum_probs=7.3 Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 999999999999986200 Q gi|254780223|r 333 VLMALIAVIWKESIMAIK 350 (360) Q Consensus 333 p~~a~~~~i~~~~~~~~~ 350 (360) |+.-.-+.+|||+..... T Consensus 59 P~sl~gQllWREffyt~a 76 (89) T 2wq7_A 59 PVSLIGQLMWREFYYTVA 76 (89) T ss_dssp TTSHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 699999999999999999 Done!