Query gi|254780223|ref|YP_003064636.1| ABC transporter permease [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 360
No_of_seqs 130 out of 4487
Neff 9.4
Searched_HMMs 23785
Date Mon May 23 21:39:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780223.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c02_A Aquaglyceroporin; membr 42.1 11 0.00044 13.9 4.9 55 305-359 190-254 (258)
2 2w2e_A Aquaporin; yeast, gatin 36.3 13 0.00055 13.4 3.7 55 305-359 221-276 (279)
3 2jwa_A Receptor tyrosine-prote 23.6 21 0.0009 12.0 4.1 29 305-333 6-34 (44)
4 3d9s_A Aquaporin-5, AQP-5; aqu 13.1 38 0.0016 10.5 3.4 21 327-347 206-226 (266)
5 1kkx_A Transcription regulator 10.9 44 0.0019 10.0 1.0 55 297-351 40-100 (123)
6 2zz9_A Aquaporin-4; water tran 10.6 46 0.0019 9.9 2.1 19 329-347 212-230 (301)
7 3iyz_A Aquaporin-4; water tran 10.5 46 0.0019 9.9 2.4 41 307-347 229-269 (340)
8 2knc_A Integrin alpha-IIB; tra 10.2 48 0.002 9.8 5.9 43 304-357 7-49 (54)
9 2a9h_A Voltage-gated potassium 9.4 53 0.0022 9.5 4.9 29 320-348 111-139 (155)
10 2hyd_A ABC transporter homolog 8.9 58 0.0024 9.3 23.3 268 13-289 14-289 (578)
No 1
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=42.13 E-value=11 Score=13.94 Aligned_cols=55 Identities=4% Similarity=-0.004 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 68889999999999999----------98897999999999999999999986200354210027
Q gi|254780223|r 305 IKLPFLPTFFGLVGGVR----------TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359 (360)
Q Consensus 305 ~~l~p~~vllsi~~g~~----------l~G~~G~ilg~p~~a~~~~i~~~~~~~~~~~~~~~~~~ 359 (360)
-.+||.-.+-.-++... .+-.|.-++||.+.+++.+...++...-+.++++.++|
T Consensus 190 ~s~NPARs~gpal~~~~~~~~~~~~~~~~y~wvy~vgP~~Ga~laa~~y~~l~~p~~~~~~~~~~ 254 (258)
T 3c02_A 190 FALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVICPLVDLANNEKD 254 (258)
T ss_dssp CCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHC-----
T ss_pred CEECHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 77167775699999986035655566771545999999999999999999995887666666446
No 2
>2w2e_A Aquaporin; yeast, gating, membrane protein; HET: BOG; 1.15A {Pichia pastoris} PDB: 2w1p_A*
Probab=36.34 E-value=13 Score=13.37 Aligned_cols=55 Identities=15% Similarity=0.053 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 68889999999999999988-97999999999999999999986200354210027
Q gi|254780223|r 305 IKLPFLPTFFGLVGGVRTMG-LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359 (360)
Q Consensus 305 ~~l~p~~vllsi~~g~~l~G-~~G~ilg~p~~a~~~~i~~~~~~~~~~~~~~~~~~ 359 (360)
-.+||.-.+-.-++.....+ .|=-.+||.+-+++-++.....+...+|++|+.|+
T Consensus 221 ~~~NPARsfGpal~~~~~~~~~Wvy~vgP~iGa~laa~iy~~~~~~~~~~~~p~~~ 276 (279)
T 2w2e_A 221 AGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLNYQTTNPGQD 276 (279)
T ss_dssp CCCSHHHHHHHHHHHTCCCTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCSCC---
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 62478998799998076645714243688899999999999998637888998988
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=23.59 E-value=21 Score=12.00 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68889999999999999988979999999
Q gi|254780223|r 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333 (360)
Q Consensus 305 ~~l~p~~vllsi~~g~~l~G~~G~ilg~p 333 (360)
.+-+|...+++-..|..+|=+.|..+|..
T Consensus 6 qrasp~t~iiatv~gill~lvi~vv~gil 34 (44)
T 2jwa_A 6 QRASPLTSIISAVVGILLVVVLGVVFGIL 34 (44)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42580899999999999999999999999
No 4
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=13.10 E-value=38 Score=10.47 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999986
Q gi|254780223|r 327 GLFIGPVLMALIAVIWKESIM 347 (360)
Q Consensus 327 G~ilg~p~~a~~~~i~~~~~~ 347 (360)
--.+||.+-+++-++..++..
T Consensus 206 vy~vgP~iGa~laa~ly~~l~ 226 (266)
T 3d9s_A 206 VFWVGPIVGAVLAAILYFYLL 226 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEHHHHHHHHHHHHHHHHHC
T ss_conf 775489999999999999813
No 5
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=10.95 E-value=44 Score=10.04 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=36.5
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 556651546888999999999999------9988979999999999999999999862003
Q gi|254780223|r 297 RPFLVGGPIKLPFLPTFFGLVGGV------RTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351 (360)
Q Consensus 297 ~P~l~g~~~~l~p~~vllsi~~g~------~l~G~~G~ilg~p~~a~~~~i~~~~~~~~~~ 351 (360)
.|.+-|+.+++.-+...+.-.+|. ..|.-+.--+|.|...-+..+|..|...+++
T Consensus 40 ~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lk~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 40 IPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp CCCCSSSSCCTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEECCEECCHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9818985544999999999971948653316699999998968789999999999999999
No 6
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=10.61 E-value=46 Score=9.95 Aligned_cols=19 Identities=26% Similarity=0.565 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999986
Q gi|254780223|r 329 FIGPVLMALIAVIWKESIM 347 (360)
Q Consensus 329 ilg~p~~a~~~~i~~~~~~ 347 (360)
.+||.+-+++-++..++..
T Consensus 212 ~vgP~~Ga~laa~ly~~l~ 230 (301)
T 2zz9_A 212 WVGPIIGAVLAGALYEYVF 230 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred EHHHHHHHHHHHHHHHHHH
T ss_conf 2398899999999999983
No 7
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=10.54 E-value=46 Score=9.92 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999999999999998897999999999999999999986
Q gi|254780223|r 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347 (360)
Q Consensus 307 l~p~~vllsi~~g~~l~G~~G~ilg~p~~a~~~~i~~~~~~ 347 (360)
+||.-.+-.-++.+..-..|--.+||.+.+++-++..++..
T Consensus 229 ~NPARs~Gpal~~~~~~~~WvywvgP~iGa~laa~iy~~i~ 269 (340)
T 3iyz_A 229 MNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVF 269 (340)
T ss_pred ECHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHH
T ss_conf 35887449999813875655010388999999999999997
No 8
>2knc_A Integrin alpha-IIB; transmembrane signaling, coiled coil, protein structure, alternative splicing, calcium, cell adhesion; NMR {Homo sapiens}
Probab=10.22 E-value=48 Score=9.81 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 468889999999999999988979999999999999999999862003542100
Q gi|254780223|r 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357 (360)
Q Consensus 304 ~~~l~p~~vllsi~~g~~l~G~~G~ilg~p~~a~~~~i~~~~~~~~~~~~~~~~ 357 (360)
.-.++-.++++|+++|..+ ++.+...+||--..++++++++.+
T Consensus 7 ~~~vP~WiIivsv~~GlLl-----------L~ll~~~LwK~GFFKR~rp~~~~~ 49 (54)
T 2knc_A 7 ERAIPIWWVLVGVLGGLLL-----------LTILVLAMWKVGFFKRNRPPLEED 49 (54)
T ss_dssp TTTCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHTTTTCCSCCCC
T ss_pred CCCCCEEHHHHHHHHHHHH-----------HHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 7888730469999999999-----------999999999827312679987604
No 9
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=9.44 E-value=53 Score=9.51 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99988979999999999999999999862
Q gi|254780223|r 320 VRTMGLLGLFIGPVLMALIAVIWKESIMA 348 (360)
Q Consensus 320 ~~l~G~~G~ilg~p~~a~~~~i~~~~~~~ 348 (360)
++++...-++.|..+.+......-++..+
T Consensus 111 gr~~~~~~~l~Gi~~~a~~~~~l~~~~~~ 139 (155)
T 2a9h_A 111 GRCVAVVVMVAGITSYGLVFAAVATWFVG 139 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999
No 10
>2hyd_A ABC transporter homolog; transport protein; HET: ADP; 3.00A {Staphylococcus aureus} SCOP: c.37.1.12 f.37.1.1 PDB: 2onj_A*
Probab=8.89 E-value=58 Score=9.29 Aligned_cols=268 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999899999998318880599999999999999999999999999999999
Q gi|254780223|r 13 RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92 (360)
Q Consensus 13 ~~l~~~~~~~~l~~~~~~l~pi~~a~~la~ll~p~~~~l~~~~~~~~~~~a~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 92 (360)
..++..+++..+........|++.+.++..+ +.................+...+++..+.........+....
T Consensus 14 ~~~~~~~l~~il~~~~~~~~p~~~~~~id~i-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (578)
T 2hyd_A 14 YRIFATIIVGIIKFGIPMLIPLLIKYAIDGV-------INNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ 86 (578)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-------TTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999998-------626875304568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999978889999985100001336666542224567666655665556778999999999999999986678999
Q gi|254780223|r 93 VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172 (360)
Q Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~ 172 (360)
.-...-..+-.....+.+...+.............+..........+.........+......++....-+..+..++++
T Consensus 87 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~i~~rl~~di~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 166 (578)
T 2hyd_A 87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA 166 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999981999998789889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHCCCCHHHHH
Q ss_conf 8997522889899999995000231579999999999888878999999999999--------99998763399824799
Q gi|254780223|r 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL--------VLGSAYWLAGVPSHVAL 244 (360)
Q Consensus 173 ~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~gi--------~~~i~~~i~Gvp~a~ll 244 (360)
.........--.....++. +...++..+...+..+.+...+.+.-.+-....- -..--..-....+....
T Consensus 167 ~l~~~~i~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~e~l~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (578)
T 2hyd_A 167 ALFIFPFYILTVYVFFGRL--RKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWN 244 (578)
T ss_dssp HTTHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999--99999999999999999999995889999998746899999998888789999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 999999988311456999999999997288699999999999999
Q gi|254780223|r 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289 (360)
Q Consensus 245 gil~~i~~~IP~~G~i~~~~~~~~~~~~~~~~~~i~~~i~~~~v~ 289 (360)
+....+.+++...+.......+......+..+.+-.+....+...
T Consensus 245 ~~~~~~~~~~~~~~~~~~l~~g~~lv~~~~ls~g~l~~~~~~~~~ 289 (578)
T 2hyd_A 245 AYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLEL 289 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 898899999999999999999999997398758899999999860
Done!