RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780223|ref|YP_003064636.1| ABC transporter permease
[Candidatus Liberibacter asiaticus str. psy62]
         (360 letters)



>gnl|CDD|182881 PRK10983, PRK10983, putative inner membrane protein; Provisional.
          Length = 368

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 1/126 (0%)

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++  G         I+L 
Sbjct: 211 IRAVALGVVVTALVQAVLGGIGLAISGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLY 270

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             G+    T L +W  + +  +D  +RP L+     LP +    G++GG+   G++GLFI
Sbjct: 271 WTGDTTWGTVLLVWSCV-VGTLDNVIRPMLIRMGADLPMILILSGVIGGLIAFGMIGLFI 329

Query: 331 GPVLMA 336
           GPV++A
Sbjct: 330 GPVVLA 335


>gnl|CDD|163054 TIGR02872, spore_ytvI, sporulation integral membrane protein YtvI. 
           Three lines of evidence show this protein to be involved
           in sporulation. First, it is under control of a
           sporulation-specific sigma factor, sigma-E. Second,
           mutation leads to a sporulation defect. Third, it if
           found in exactly those genomes whose bacteria are
           capable of sporulation, except for being absent in
           Clostridium acetobutylicum ATCC824. This protein has
           extensive hydrophobic regions and is likely an integral
           membrane protein.
          Length = 341

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 70/345 (20%), Positives = 133/345 (38%), Gaps = 32/345 (9%)

Query: 13  RWMIMFIILVSL----YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           R +++  ++       YF   +  P + ALI+      I    +   E+       +A  
Sbjct: 1   RLILLIGLIAIFVLAIYFALPYSLPFVIALILAL----ILEPMVRFLEKKLKLPRALAVF 56

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVL--------ANQHGIPVPRWLSDIPGGMWAS 120
            V+ +F+  +  L Y  + E+      +           N H +P+   L    G +   
Sbjct: 57  IVLLIFLGIIGGLLYILVTELVTETIALAKNLPQYLNNINDHILPLIDDLESYYGSLPPG 116

Query: 121 ELWTKHLSHPQSLKILSETF--LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
           + +T   +    L+ L        TN I  IP F +          + ++F +IA FF  
Sbjct: 117 QQYTIVNNIQTLLEKLLNYVVSFATNLITSIPSFIASIPNFL----IVLLFTLIATFFIS 172

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG----MTIIAIGEGLVLGSAYW 234
           +D      +L S    + P    +  + +   ++    G      I+ +   +++     
Sbjct: 173 KD----LPRLKSKLFSILPERTSQKLKNIFSELKKAAFGFLKAQLILVLITFVIVLIGLL 228

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           + GV   + L +I  I+ ++P   P +     ++YL I GN      L +   + + I+ 
Sbjct: 229 IIGVDYALTLALIIGIVDILPILGPGAVLVPWALYLFITGNYAMGIGLLILYLV-VLILR 287

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           + L P +V   I L  L T   +  G++  G LGL  GPV++ L 
Sbjct: 288 QILEPKVVSSSIGLHPLATLISMYIGLKLFGFLGLIFGPVIVVLF 332


>gnl|CDD|118258 pfam09726, Macoilin, Transmembrane protein.  This entry is a highly
           conserved protein present in eukaryotes.
          Length = 680

 Score = 30.3 bits (68), Expect = 0.79
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFT---SWP-------IYSSFISKKEESSTFLAVIATVS- 69
            + + FL  +   +L+  I+ F     WP       +Y SF  +    S F   IA  S 
Sbjct: 28  FLYIKFLLIWAFVLLADFILEFRFEYLWPFWLLIRSVYDSFKYQGLAFSVFFVCIAITSD 87

Query: 70  VMCLFIVPLLFLFY 83
            +CL  +P+ +LF+
Sbjct: 88  TICLLFIPVQWLFF 101


>gnl|CDD|178211 PLN02601, PLN02601, beta-carotene hydroxylase.
          Length = 303

 Score = 29.3 bits (65), Expect = 1.7
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 54  KKEESSTFL--AVIATVSVMCLFIVPLLFLFYYGM----LEMKELVSKVVLANQHGIPVP 107
           KK E  T+L  AV+++  +  + I+ + + F + M    + M E+     L+    + + 
Sbjct: 89  KKSERFTYLIAAVMSSFGITSMAIMAVYYRFSWQMKGGEVSMLEMFGTFALSVGAAVGME 148

Query: 108 RWLSDIPGGMWASELWTKHLSH 129
            W       +W   LW  H SH
Sbjct: 149 FWARWAHRALWHDSLWNMHESH 170


>gnl|CDD|168293 PRK05910, PRK05910, type III secretion system protein; Validated.
          Length = 584

 Score = 28.6 bits (64), Expect = 2.7
 Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 11/124 (8%)

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII-AIGEGLVLG--SAYWLAGVPSHVA 243
           + +SL +HL   Y  + SR   + I      +  I    +  +LG     +LA       
Sbjct: 251 EKESLLQHLLDYY--EQSRQHFRFIALLLCSLACIPGAPKAPILGFSVLLFLAYKNPSSG 308

Query: 244 --LGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L         +    P        ++Y   +  IF    +     I +  V+    P 
Sbjct: 309 ETLLFQKERFEFVELALPDEGVGNPANLYRAAREEIFQELGVVFPEEIVVRHVES--SPR 366

Query: 300 LVGG 303
           L+  
Sbjct: 367 LIFS 370


>gnl|CDD|179386 PRK02227, PRK02227, hypothetical protein; Provisional.
          Length = 238

 Score = 28.0 bits (63), Expect = 4.2
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 5/31 (16%)

Query: 239 PSHVALG-----VITAIMAMIPGGAPISFTA 264
           P   +LG     VI  I+A +PG  P+S T 
Sbjct: 29  PKEGSLGANFPWVIREIVAAVPGRKPVSATI 59


>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
          Length = 1622

 Score = 27.4 bits (61), Expect = 6.3
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)

Query: 59   STFLAVIATVSVMCLF-IVPLLFLFY 83
            STF  +I  VS + L+ I+PLL LFY
Sbjct: 1043 STF-VLIGIVSTISLWAIMPLLVLFY 1067


>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
           Provisional.
          Length = 406

 Score = 27.2 bits (61), Expect = 6.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           G+++ A G GL     Y L    S V+ G ++A M M+
Sbjct: 315 GLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGML 352


>gnl|CDD|183648 PRK12648, PRK12648, putative monovalent cation/H+ antiporter
           subunit A; Reviewed.
          Length = 948

 Score = 27.1 bits (61), Expect = 6.7
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLY-FLKG 29
            L P  + R ++   +LVS+Y FL+G
Sbjct: 795 PLVPAVLARLLLPLALLVSVYLFLRG 820


>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
          Length = 1495

 Score = 26.9 bits (59), Expect = 8.2
 Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 2/26 (7%)

Query: 59   STFLAVIATVSVMCLF-IVPLLFLFY 83
            STF A+I TVS + L+ I+PLL LFY
Sbjct: 1040 STF-ALIGTVSTISLWAIMPLLILFY 1064


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.331    0.145    0.454 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,149,141
Number of extensions: 421442
Number of successful extensions: 1739
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1725
Number of HSP's successfully gapped: 123
Length of query: 360
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 265
Effective length of database: 3,941,713
Effective search space: 1044553945
Effective search space used: 1044553945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.1 bits)