RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780223|ref|YP_003064636.1| ABC transporter permease [Candidatus Liberibacter asiaticus str. psy62] (360 letters) >gnl|CDD|182881 PRK10983, PRK10983, putative inner membrane protein; Provisional. Length = 368 Score = 52.7 bits (127), Expect = 2e-07 Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 1/126 (0%) Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270 IR+ LG+ + A+ + ++ G ++GVP L V+ + ++ G I+L Sbjct: 211 IRAVALGVVVTALVQAVLGGIGLAISGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLY 270 Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330 G+ T L +W + + +D +RP L+ LP + G++GG+ G++GLFI Sbjct: 271 WTGDTTWGTVLLVWSCV-VGTLDNVIRPMLIRMGADLPMILILSGVIGGLIAFGMIGLFI 329 Query: 331 GPVLMA 336 GPV++A Sbjct: 330 GPVVLA 335 >gnl|CDD|163054 TIGR02872, spore_ytvI, sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein. Length = 341 Score = 43.4 bits (103), Expect = 9e-05 Identities = 70/345 (20%), Positives = 133/345 (38%), Gaps = 32/345 (9%) Query: 13 RWMIMFIILVSL----YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68 R +++ ++ YF + P + ALI+ I + E+ +A Sbjct: 1 RLILLIGLIAIFVLAIYFALPYSLPFVIALILAL----ILEPMVRFLEKKLKLPRALAVF 56 Query: 69 SVMCLFIVPLLFLFYYGMLEMKELVSKVVL--------ANQHGIPVPRWLSDIPGGMWAS 120 V+ +F+ + L Y + E+ + N H +P+ L G + Sbjct: 57 IVLLIFLGIIGGLLYILVTELVTETIALAKNLPQYLNNINDHILPLIDDLESYYGSLPPG 116 Query: 121 ELWTKHLSHPQSLKILSETF--LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178 + +T + L+ L TN I IP F + + ++F +IA FF Sbjct: 117 QQYTIVNNIQTLLEKLLNYVVSFATNLITSIPSFIASIPNFL----IVLLFTLIATFFIS 172 Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG----MTIIAIGEGLVLGSAYW 234 +D +L S + P + + + ++ G I+ + +++ Sbjct: 173 KD----LPRLKSKLFSILPERTSQKLKNIFSELKKAAFGFLKAQLILVLITFVIVLIGLL 228 Query: 235 LAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293 + GV + L +I I+ ++P P + ++YL I GN L + + + I+ Sbjct: 229 IIGVDYALTLALIIGIVDILPILGPGAVLVPWALYLFITGNYAMGIGLLILYLV-VLILR 287 Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338 + L P +V I L L T + G++ G LGL GPV++ L Sbjct: 288 QILEPKVVSSSIGLHPLATLISMYIGLKLFGFLGLIFGPVIVVLF 332 >gnl|CDD|118258 pfam09726, Macoilin, Transmembrane protein. This entry is a highly conserved protein present in eukaryotes. Length = 680 Score = 30.3 bits (68), Expect = 0.79 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 11/74 (14%) Query: 21 LVSLYFLKGFFAPVLSALIIGFT---SWP-------IYSSFISKKEESSTFLAVIATVS- 69 + + FL + +L+ I+ F WP +Y SF + S F IA S Sbjct: 28 FLYIKFLLIWAFVLLADFILEFRFEYLWPFWLLIRSVYDSFKYQGLAFSVFFVCIAITSD 87 Query: 70 VMCLFIVPLLFLFY 83 +CL +P+ +LF+ Sbjct: 88 TICLLFIPVQWLFF 101 >gnl|CDD|178211 PLN02601, PLN02601, beta-carotene hydroxylase. Length = 303 Score = 29.3 bits (65), Expect = 1.7 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 6/82 (7%) Query: 54 KKEESSTFL--AVIATVSVMCLFIVPLLFLFYYGM----LEMKELVSKVVLANQHGIPVP 107 KK E T+L AV+++ + + I+ + + F + M + M E+ L+ + + Sbjct: 89 KKSERFTYLIAAVMSSFGITSMAIMAVYYRFSWQMKGGEVSMLEMFGTFALSVGAAVGME 148 Query: 108 RWLSDIPGGMWASELWTKHLSH 129 W +W LW H SH Sbjct: 149 FWARWAHRALWHDSLWNMHESH 170 >gnl|CDD|168293 PRK05910, PRK05910, type III secretion system protein; Validated. Length = 584 Score = 28.6 bits (64), Expect = 2.7 Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 11/124 (8%) Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII-AIGEGLVLG--SAYWLAGVPSHVA 243 + +SL +HL Y + SR + I + I + +LG +LA Sbjct: 251 EKESLLQHLLDYY--EQSRQHFRFIALLLCSLACIPGAPKAPILGFSVLLFLAYKNPSSG 308 Query: 244 --LGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299 L + P ++Y + IF + I + V+ P Sbjct: 309 ETLLFQKERFEFVELALPDEGVGNPANLYRAAREEIFQELGVVFPEEIVVRHVES--SPR 366 Query: 300 LVGG 303 L+ Sbjct: 367 LIFS 370 >gnl|CDD|179386 PRK02227, PRK02227, hypothetical protein; Provisional. Length = 238 Score = 28.0 bits (63), Expect = 4.2 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 5/31 (16%) Query: 239 PSHVALG-----VITAIMAMIPGGAPISFTA 264 P +LG VI I+A +PG P+S T Sbjct: 29 PKEGSLGANFPWVIREIVAAVPGRKPVSATI 59 >gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional. Length = 1622 Score = 27.4 bits (61), Expect = 6.3 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%) Query: 59 STFLAVIATVSVMCLF-IVPLLFLFY 83 STF +I VS + L+ I+PLL LFY Sbjct: 1043 STF-VLIGIVSTISLWAIMPLLVLFY 1067 >gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA; Provisional. Length = 406 Score = 27.2 bits (61), Expect = 6.5 Identities = 13/38 (34%), Positives = 20/38 (52%) Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254 G+++ A G GL Y L S V+ G ++A M M+ Sbjct: 315 GLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGML 352 >gnl|CDD|183648 PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed. Length = 948 Score = 27.1 bits (61), Expect = 6.7 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Query: 5 MLNPQGIMRWMIMFIILVSLY-FLKG 29 L P + R ++ +LVS+Y FL+G Sbjct: 795 PLVPAVLARLLLPLALLVSVYLFLRG 820 >gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional. Length = 1495 Score = 26.9 bits (59), Expect = 8.2 Identities = 16/26 (61%), Positives = 20/26 (76%), Gaps = 2/26 (7%) Query: 59 STFLAVIATVSVMCLF-IVPLLFLFY 83 STF A+I TVS + L+ I+PLL LFY Sbjct: 1040 STF-ALIGTVSTISLWAIMPLLILFY 1064 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.331 0.145 0.454 Gapped Lambda K H 0.267 0.0744 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,149,141 Number of extensions: 421442 Number of successful extensions: 1739 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1725 Number of HSP's successfully gapped: 123 Length of query: 360 Length of database: 5,994,473 Length adjustment: 95 Effective length of query: 265 Effective length of database: 3,941,713 Effective search space: 1044553945 Effective search space used: 1044553945 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 58 (26.1 bits)