RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780223|ref|YP_003064636.1| ABC transporter permease
[Candidatus Liberibacter asiaticus str. psy62]
         (360 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.6 bits (87), Expect = 0.004
 Identities = 68/389 (17%), Positives = 109/389 (28%), Gaps = 171/389 (43%)

Query: 80  FLFYYGMLEMKELVSKVV--LANQH------GIPVPR---WLSDIPGGMWAS--ELWTKH 126
               +G LE   LV      +A+Q        +P P       D P     +  EL  K 
Sbjct: 9   LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP----TTPAELVGKF 64

Query: 127 LSH-------------PQSLK-ILSE---TFLKTNGI---------DFIPRFASRFGMI- 159
           L +              Q L   L+E    +L+ N I         +          +I 
Sbjct: 65  LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124

Query: 160 -FLDYCL-----------SIIFM--------IIALF--------FF---------YRDGF 182
            ++   +           S +F         ++A+F        +F         Y    
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYH-VL 183

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF-LGMTIIAIGEGLVLGSAYWLAG---V 238
            +   +    E L      ++ R         F  G+ I+            WL      
Sbjct: 184 -VGDLIKFSAETL-----SELIRT-TLDAEKVFTQGLNILE-----------WLENPSNT 225

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL--FIV---- 292
           P           +       PIS        LI             G I+L  ++V    
Sbjct: 226 PD-------KDYLL----SIPISCP------LI-------------GVIQLAHYVVTAKL 255

Query: 293 -DKT---LRPFLVG------GPIKLPFL------PTFFGLVGGVRTMGLLGLFIG----- 331
              T   LR +L G      G +    +       +FF  V   + + +L  FIG     
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV--RKAITVL-FFIGVRCYE 312

Query: 332 --PVLMALIAVIWKESIMAIKENKEKISS 358
             P   +L   I ++S+    EN E + S
Sbjct: 313 AYPN-TSLPPSILEDSL----ENNEGVPS 336



 Score = 35.7 bits (82), Expect = 0.018
 Identities = 50/351 (14%), Positives = 95/351 (27%), Gaps = 153/351 (43%)

Query: 52  ISKKEESSTFLAVIA-TVSVMCLF---------IVPL--LFLFYYGMLEMKELVSKV--V 97
             KK  S+ F AV      ++ +F            L  L+  Y+ ++   +L+      
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG--DLIKFSAET 194

Query: 98  LAN------------QHGIPVPRWLSD---IPGGMWASELWTKHL-SHPQSLKILSETFL 141
           L+               G+ +  WL +    P           +L S P S  ++    L
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPD--------KDYLLSIPISCPLIGVIQL 246

Query: 142 -------KTNGIDFIP-RFASRF--------GMI-------------FLDYCLSIIFMII 172
                  K  G    P    S          G++             F  +        I
Sbjct: 247 AHYVVTAKLLGFT--PGELRSYLKGATGHSQGLVTAVAIAETDSWESF--FVSVR--KAI 300

Query: 173 ALFFF--YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
            + FF   R       +        +P      + + P ++  +      +   EG+   
Sbjct: 301 TVLFFIGVR-----CYE-------AYPN-----TSLPPSILEDS------LENNEGV--- 334

Query: 231 SAYWL--AGVP------------------SHVALGVITAIMAMIPGGAPISFTAVSIYL- 269
            +  L  + +                     V + ++     ++  G P S   +++ L 
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRP-----------FLVGGPIKLPF 309
             K      + L           D++  P           FL   P+  PF
Sbjct: 395 KAK----APSGL-----------DQSRIPFSERKLKFSNRFL---PVASPF 427


>1yyc_A LEA protein, putative late embryogenesis abundant protein;
           structural genomics, protein structure initiative, CESG;
           NMR {Arabidopsis thaliana}
          Length = 174

 Score = 29.0 bits (65), Expect = 1.6
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 17/77 (22%)

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           VP  VA  +  ++M  +     I +        +   +            ++ +V     
Sbjct: 115 VPVKVAYSIAVSLMKDMCTDWDIDYQ-------LDIGL----------TFDIPVVGDITI 157

Query: 298 PFLVGGPIKLPFLPTFF 314
           P    G IKLP L  FF
Sbjct: 158 PVSTQGEIKLPSLRDFF 174


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.8 bits (63), Expect = 1.7
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 17/42 (40%)

Query: 27 LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
          LK      L A      S  +Y+      ++S+  LA+ AT+
Sbjct: 22 LKK-----LQA------SLKLYA------DDSAPALAIKATM 46


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.331    0.145    0.454 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,151,717
Number of extensions: 145752
Number of successful extensions: 534
Number of sequences better than 10.0: 1
Number of HSP's gapped: 520
Number of HSP's successfully gapped: 50
Length of query: 360
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 266
Effective length of database: 3,414,294
Effective search space: 908202204
Effective search space used: 908202204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.1 bits)