HHsearch alignment for GI: 254780224 and conserved domain: COG5330
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=100.00 E-value=0 Score=373.76 Aligned_cols=356 Identities=26% Similarity=0.328 Sum_probs=337.6
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHC
Q ss_conf 95899999841799789999999999996357899899999999999985196989999999982148789889999870
Q gi|254780224|r 1 MSVQSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAIALSDTAPKHVVLALS 80 (382)
Q Consensus 1 miv~~fl~~~~~a~~~~Ra~~a~~l~r~~~~~~l~~~er~~a~~iL~~L~~d~~~~vR~alA~~La~~~~aP~~vi~~LA 80 (382)
T Consensus 7 ~~~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~~~~Pr~l~~~La 86 (364)
T COG5330 7 STDQDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQCETAPRALARALA 86 (364)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 46999999844798368999999988888537521778999999999986086588999999998718767799999884
Q ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 89778999999738589989999999549999999986299999899999984398999999860899846946799999
Q gi|254780224|r 81 EDHPDVSGTIILHSPVLKDNDLVDLIGRGNKLTSIFVASRHKLSHVVVENLIETGCVDNIVALLGNKSVFLSNSLLMQIV 160 (382)
Q Consensus 81 ~D~~~vA~pvL~~Sp~L~d~dLv~ia~~~~~~~~~AIA~R~~ls~~V~~aLae~gd~~v~~~Ll~N~~A~is~~~l~~lv 160 (382)
T Consensus 87 ~d~~~IAapll~rSpal~d~dLv~i~~~~G~~h~raIarR~~ls~~v~~~Lv~~g~~~~~~~~~~n~~A~~~~~al~~~~ 166 (364)
T COG5330 87 EDPISIAAPLLIRSPALTDDDLVDIARRQGPAHARAIARRPSLSPLVIDALVERGDEEEVLVLLENDAAPLSPYALQRVA 166 (364)
T ss_pred CCCHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 59766767899718677837899999964889999998456888689999998077123310233545766788998876
Q ss_pred HHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 98178989999986246899899999999867999997852158998999999998888786432015677346999999
Q gi|254780224|r 161 ERFCHDASIRNLLSLRTDLSLKARYLLMKSVCNVLSQSKIVQKSITFRRTQILFEESMRVGILEMISHVRDVQALRELVD 240 (382)
Q Consensus 161 ~ra~~~~~l~~~L~~R~dLp~~~~~~L~~~vs~~lr~~l~~r~~l~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~lv~ 240 (382)
T Consensus 167 d~~a~~~~~~~~~~~r~~lp~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~~l~~~a~~~~a~~~~aa~ad~~~~-~~~~ 245 (364)
T COG5330 167 DRAAAEPALRQAAVDREALPLRARIELAARVGERLRDSILVKAQISEARAAELVRFARERAAILFAAALADALDI-RFVA 245 (364)
T ss_pred HHHCCCHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHH
T ss_conf 420147667786203342452579999999887763365044135777799999987322578877750673124-7899
Q ss_pred HHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 99865899989999989819947999999998299989999997179917999999962999889999999999998402
Q gi|254780224|r 241 LLHDDGQLTPALLIYAIMIGAIDFVSVILANIAEYSTDRVYSILSTGGFHVICALYELVGLSPEISEIFVEATMIWRELA 320 (382)
Q Consensus 241 ~L~~~g~Lt~~lllral~~G~~~~f~~aLA~lsgi~~~~v~~ll~d~~~~~l~aL~~aaGLp~~~~~af~~A~~~~r~~~ 320 (382)
T Consensus 246 ~~r~~~~~s~~~L~~aL~~~~~~~~~aalv~~ag~p~~~~r~i~~~~r~~al~~i~~~~~l~~rV~~~f~a~~~-----~ 320 (364)
T COG5330 246 ALRIMLSLSPALLAAALRSLGLSFFEAALVDLAGLPSHRVRRIGRGGRPHALRAILRTAALDERVRSWFRADAL-----E 320 (364)
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH-----H
T ss_conf 99997247889999999738987148999986278721279986033179999987522540789999997634-----3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6676531788999999999973025788200899999853168
Q gi|254780224|r 321 VGSTVMEPGIIAEKLLERMRKRNISGLPAGELLEMVERIYLDV 363 (382)
Q Consensus 321 ~~~~~~~~~~~~~~~~er~~~~~~~~~~~~~l~~ll~r~~~~~ 363 (382)
T Consensus 321 ~~~~~~~r~s~~a~~~~r~~r~s-~~aa~~~~~~~~r~~~~a~ 362 (364)
T COG5330 321 LRDHAMARASALAEALARFPRDS-DEAAVDELSAPVRKLDLAA 362 (364)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHH
T ss_conf 14424444654458886046762-5778998997767765542