HHsearch alignment for GI: 254780224 and conserved domain: pfam10098
>pfam10098 DUF2336 Uncharacterized protein conserved in bacteria (DUF2336). Members of this family of hypothetical bacterial proteins have no known function.
Probab=96.58 E-value=0.047 Score=30.55 Aligned_cols=220 Identities=15% Similarity=0.072 Sum_probs=133.6
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHH-HHHHHHH-HCCCCCHHHHHHHHH--CCCHHHHHHHHC
Q ss_conf 999998519698999999998214878988999987089778-9999997-385899899999995--499999999862
Q gi|254780224|r 44 LAMMHLLDDPSSRVRLSLARAIALSDTAPKHVVLALSEDHPD-VSGTIIL-HSPVLKDNDLVDLIG--RGNKLTSIFVAS 119 (382)
Q Consensus 44 ~iL~~L~~d~~~~vR~alA~~La~~~~aP~~vi~~LA~D~~~-vA~pvL~-~Sp~L~d~dLv~ia~--~~~~~~~~AIA~ 119 (382)
T Consensus 15 ~DLi~ia~~~~~~h~~AIA~R----~~ls~~VtdaLve~gd~~vv~~Ll~N~gA~is~~~~~~lv~ra~~~~~l~~~L~~ 90 (263)
T pfam10098 15 ADLIEIARTGGQEHLLAIARR----PDLSEAVTDALVERGDREVVRRLLRNPGARFSEAGLERLVERAADDAALREALGA 90 (263)
T ss_pred HHHHHHHHHCCHHHHHHHHCC----CCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHC
T ss_conf 999999996899999997778----9899899999997288899999872999817867899999987656889998855
Q ss_pred CCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999899999984398999999860899846946799999981789899999862468998999999998679999978
Q gi|254780224|r 120 RHKLSHVVVENLIETGCVDNIVALLGNKSVFLSNSLLMQIVERFCHDASIRNLLSLRTDLSLKARYLLMKSVCNVLSQSK 199 (382)
Q Consensus 120 R~~ls~~V~~aLae~gd~~v~~~Ll~N~~A~is~~~l~~lv~ra~~~~~l~~~L~~R~dLp~~~~~~L~~~vs~~lr~~l 199 (382)
T Consensus 91 R~dLp~~~~~~L~~~vs~~lr~~l~~-~~~~~~~~~~~~~~~~a~~~a~~~~~-----~~~~~------~~~~~~~v~~l 158 (263)
T pfam10098 91 RPDLPADVRRRLLAKVSEALRAKLLA-RAAPLSAERIQRAVREAAERAAADLA-----ADSRD------FAEAKRLVRHL 158 (263)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHC-----CCCCC------HHHHHHHHHHH
T ss_conf 64699999999999967999999998-34556899999999999998750001-----23432------56799999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHH
Q ss_conf 52158998999999998888786432015677346999999998658999899999898199479999999982999899
Q gi|254780224|r 200 IVQKSITFRRTQILFEESMRVGILEMISHVRDVQALRELVDLLHDDGQLTPALLIYAIMIGAIDFVSVILANIAEYSTDR 279 (382)
Q Consensus 200 ~~r~~l~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~lv~~L~~~g~Lt~~lllral~~G~~~~f~~aLA~lsgi~~~~ 279 (382)
T Consensus 159 ~~~g~L~~~~l~r~l~~-------------g~---~~~~~~ala~l~gi~~~~v~~il~~~~~~-~l~~l~kaaGL~~~~ 221 (263)
T pfam10098 159 RARGRLTEALLLRAALS-------------GR---LEEFAAALAELSGLPVETVRRLLHDGRGE-GLAALCKAAGLSWAT 221 (263)
T ss_pred HHCCCCCHHHHHHHHHC-------------CC---HHHHHHHHHHHHCCCHHHHHHHHHCCCCH-HHHHHHHHCCCCHHH
T ss_conf 87589999999999985-------------99---78999999988693999999998379956-999999985989999
Q ss_pred HHHHHHCCCCHHHHHHHHHCCCCHH
Q ss_conf 9999717991799999996299988
Q gi|254780224|r 280 VYSILSTGGFHVICALYELVGLSPE 304 (382)
Q Consensus 280 v~~ll~d~~~~~l~aL~~aaGLp~~ 304 (382)
T Consensus 222 ~~~~~~--------a~~~~~~~~~~ 238 (263)
T pfam10098 222 FAALLA--------ARDGWRRIAPS 238 (263)
T ss_pred HHHHHH--------HHHHHCCCCHH
T ss_conf 999999--------86632249877