RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780224|ref|YP_003064637.1| hypothetical protein
CLIBASIA_00545 [Candidatus Liberibacter asiaticus str. psy62]
(382 letters)
>gnl|CDD|150738 pfam10098, DUF2336, Uncharacterized protein conserved in bacteria
(DUF2336). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 263
Score = 108 bits (271), Expect = 3e-24
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 1/236 (0%)
Query: 86 VSGTIILHSPVLKDNDLVDLIGRGNKLTSIFVASRHKLSHVVVENLIETGCVDNIVALLG 145
V+G ++ SPVL D DL+++ G + + +A R LS V + L+E G + + LL
Sbjct: 1 VAGPVLERSPVLSDADLIEIARTGGQEHLLAIARRPDLSEAVTDALVERGDREVVRRLLR 60
Query: 146 NKSVFLSNSLLMQIVERFCHDASIRNLLSLRTDLSLKARYLLMKSVCNVLSQSKIVQ-KS 204
N S + L ++VER DA++R L R DL R L+ V L + +
Sbjct: 61 NPGARFSEAGLERLVERAADDAALREALGARPDLPADVRRRLLAKVSEALRAKLLARAAP 120
Query: 205 ITFRRTQILFEESMRVGILEMISHVRDVQALRELVDLLHDDGQLTPALLIYAIMIGAIDF 264
++ R Q E+ ++ + RD + LV L G+LT ALL+ A + G ++
Sbjct: 121 LSAERIQRAVREAAERAAADLAADSRDFAEAKRLVRHLRARGRLTEALLLRAALSGRLEE 180
Query: 265 VSVILANIAEYSTDRVYSILSTGGFHVICALYELVGLSPEISEIFVEATMIWRELA 320
+ LA ++ + V +L G + AL + GLS + A WR +A
Sbjct: 181 FAAALAELSGLPVETVRRLLHDGRGEGLAALCKAAGLSWATFAALLAARDGWRRIA 236
>gnl|CDD|162973 TIGR02682, cas_csx11, CRISPR-associated protein, Csx11 family.
Members of this uncommon, sporadically distributed
protein family are large (>900 amino acids) and strictly
associated, so far, with CRISPR-associated (Cas) gene
clusters. Nearby Cas genes always include members of the
RAMP superfamily and the six-gene CRISPR-associated RAMP
module. Species in which it is found, so far, include
three archaea (Methanosarcina mazei, M. barkeri and
Methanobacterium thermoautotrophicum) and two bacteria
(Thermodesulfovibrio yellowstonii DSM 11347 and
Sulfurihydrogenibium azorense).
Length = 918
Score = 30.2 bits (68), Expect = 0.80
Identities = 20/80 (25%), Positives = 34/80 (42%)
Query: 84 PDVSGTIILHSPVLKDNDLVDLIGRGNKLTSIFVASRHKLSHVVVENLIETGCVDNIVAL 143
+V I+H P LKDND +D+ + + AS + + E + + L
Sbjct: 773 NEVDDRYIVHVPNLKDNDCLDINTSRFDIFFLKSASDRRAFQLKSNRPYELEEIWDFKDL 832
Query: 144 LGNKSVFLSNSLLMQIVERF 163
S LSN+ + ++V F
Sbjct: 833 WDTFSDNLSNAQIHKLVNIF 852
>gnl|CDD|183680 PRK12683, PRK12683, transcriptional regulator CysB-like protein;
Reviewed.
Length = 309
Score = 28.5 bits (64), Expect = 2.8
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 335 LLERMRKRNISGL--PAGELLEMVERIYLDVN--RRFVRSMATRSS-RLIAAA 382
+ R KR ++GL P ELL++VER+ LD RR A R S L A
Sbjct: 48 IFIRRGKR-LTGLTEPGKELLQIVERMLLDAENLRRLAEQFADRDSGHLTVAT 99
>gnl|CDD|183124 PRK11412, PRK11412, putative uracil/xanthine transporter;
Provisional.
Length = 433
Score = 28.6 bits (64), Expect = 3.2
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 246 GQLTPALLIYAIMIGAIDFVSVILANIAEYSTDRVY------------SILSTGGFHVIC 293
G L P +++ A++ G ++ +S I TD Y S ++TG +I
Sbjct: 235 GALEPGIILTAVITGLVN-ISNTYGAIR--GTDVFYPQQGAGNTRYRRSFVATGFMTLIT 291
Query: 294 ALYELVGLSPEISEI-FVEATMIWR 317
++ SP +S I + T +R
Sbjct: 292 VPLAVIPFSPFVSSIGLLTQTGDYR 316
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 28.5 bits (63), Expect = 3.2
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 15 LQERISIARILGRTWCMEELLDQEKDSL---VLAMMHLLDDPSSRVRLSLARAIALSDTA 71
L E S+ GR M ++ + K+ VL++ H LD+ +S R+ + +A + A
Sbjct: 164 LDESTSMLDPTGRQEIMR-VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEA 222
Query: 72 PKHVVLALSEDHPDVSGTIILHSPVLKD 99
+ A SED ++ + S ++KD
Sbjct: 223 APSELFATSEDMVEIGLDVPFSSNLMKD 250
>gnl|CDD|162528 TIGR01776, TonB-tbp-lbp, TonB-dependent lactoferrin and transferrin
receptors. This family of TonB-dependent receptors are
responsible for import of iron from the mammalian iron
carriers lactoferrin and transferrin across the outer
membrane. These receptors are found only in bacteria
which can infect mammals such as Moraxella, Mannheimia,
Neisseria, Actinobacillus, Pasteurella, Haemophilus and
Histophilus species.
Length = 932
Score = 27.9 bits (62), Expect = 4.4
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 62 ARAIALSDTAPKHVVLALSEDHPDVS---GTIILHSPVLKDNDLVDLIGRGNK 111
R+ L P V+ L DHP + +S ++L GN
Sbjct: 795 VRSPLLDAIQPARYVVGLGYDHPSQKWGINLTLTYSKAKNPDELAGTEYLGNG 847
>gnl|CDD|179944 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional.
Length = 233
Score = 27.8 bits (63), Expect = 5.4
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 220 VGILEMISHVRDVQA-LRELVDLLHDDGQL-------TPALLIYAIMIGA 261
V +EM+ HV D + +R L+ G + + AI +GA
Sbjct: 118 VTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAI-VGA 166
>gnl|CDD|181692 PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional.
Length = 350
Score = 27.5 bits (62), Expect = 6.3
Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 15/51 (29%)
Query: 304 EISEIFVEAT--------MIWRELAVGSTV-MEPGI-IAEKLLERMRKRNI 344
+ E A MI S +E I I K LERM K +
Sbjct: 115 DAGEKHFAAGGKPLFSSHMI-----DLSEEPLEENIEICSKYLERMAKAGM 160
>gnl|CDD|180612 PRK06543, PRK06543, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 281
Score = 27.4 bits (61), Expect = 6.6
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 98 KDNDLVDLIGRGNKLTSIFVASRHKLSH 125
KDN L L +G LT R +L H
Sbjct: 165 KDNHLAALAAQGLDLTEALRHVRAQLGH 192
>gnl|CDD|184029 PRK13399, PRK13399, fructose-1,6-bisphosphate aldolase;
Provisional.
Length = 347
Score = 27.4 bits (61), Expect = 6.8
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 43 VLAMMHLLDDPSSRVRLSL---ARAIALSDTAPKHVVLALSEDHPDVSGTIILH 93
+LA+M + S V L AR A D +H+VLA +E +PD+ I LH
Sbjct: 31 ILAIMEAAEATDSPVILQASRGARKYA-GDAMLRHMVLAAAEMYPDIP--ICLH 81
>gnl|CDD|132588 TIGR03549, TIGR03549, conserved hypothetical protein TIGR03549.
This family consists of remarkably well-conserved
proteins from gamma and beta Proteobacteria, heavily
skewed towards organisms of marine environments. This
family has an OsmC-like N-terminal domain. It shares a
central domain, modeled by pfam02624 and TIGR00702, with
other families of smaller proteins. The function is
unknown. Fifteen of the first sixteen members of this
family are from selenouridine-positive genomes, but this
correlation may be fortuitous.
Length = 718
Score = 27.1 bits (60), Expect = 7.4
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 262 IDFVSVILANIAEYSTDRVYSILSTGGFHVICALYELVG------LSPEISEIFVEATMI 315
DFV + E ++ IL G V A+YE +G L P SE++ +I
Sbjct: 486 YDFVEWDFSGTNEEEAATLFGILEDMGKEVYIAVYEDLGAPACRILVPGYSEVYPVEDLI 545
Query: 316 W 316
W
Sbjct: 546 W 546
>gnl|CDD|180949 PRK07370, PRK07370, enoyl-(acyl carrier protein) reductase;
Validated.
Length = 258
Score = 27.0 bits (60), Expect = 8.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 221 GILEMISHVRDVQALRELV 239
GIL+MI HV + LR V
Sbjct: 204 GILDMIHHVEEKAPLRRTV 222
>gnl|CDD|180908 PRK07252, PRK07252, hypothetical protein; Provisional.
Length = 120
Score = 27.0 bits (60), Expect = 9.2
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 11/48 (22%)
Query: 132 IETGCVDNIVALLGNKSVFLSNSLLMQIV--ERFCHDASIRNLLSLRT 177
I+TG +DNI LL + +L+Q+V + + AS LSLRT
Sbjct: 36 IKTGFIDNIHQLLK-----VGEEVLVQVVDFDEYTGKAS----LSLRT 74
>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated.
Length = 265
Score = 26.7 bits (59), Expect = 9.4
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 233 QALRELVDLLH--DDGQLTPALLIY 255
QALR DLL DG+L+PAL Y
Sbjct: 208 QALRASKDLLREVGDGELSPALRRY 232
>gnl|CDD|180340 PRK05989, cobN, cobaltochelatase subunit CobN; Reviewed.
Length = 1244
Score = 26.8 bits (60), Expect = 9.5
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 7/38 (18%)
Query: 331 IAEKLLERMRKRNISGL---PAGELLEMVERIYLDVNR 365
IAE+LLE R+ GL P E LE++E +YL++
Sbjct: 1210 IAERLLEAARR----GLWQAPDPETLELLEELYLEIEG 1243
>gnl|CDD|178470 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 27.0 bits (60), Expect = 9.5
Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 12/122 (9%)
Query: 45 AMMHLLDDPSSRVRLSLARAIALSDTAPKHVVLALSEDHPDVSG---TIILHSPVLKDND 101
A+ +L + +R SL + S P H V+ E VSG I L P L N+
Sbjct: 1033 ALSQVLKSQAQYIRESLGSPLLPSSMMPSHAVVIAEESFHGVSGLSFKISLARPALAFNE 1092
Query: 102 --LVDLIGRGNKLT---SIFVASRH--KLSHVVVENLIETGCVDNIVA--LLGNKSVFLS 152
L+ L +L + SR L I+ C +N ++ K LS
Sbjct: 1093 DALLALCSGDEELAEGVEAVLLSRDHSNLKSEFQAGKIKLSCRENGPEVDVVLGKHFHLS 1152
Query: 153 NS 154
S
Sbjct: 1153 VS 1154
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.324 0.137 0.379
Gapped
Lambda K H
0.267 0.0631 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,158,712
Number of extensions: 413377
Number of successful extensions: 1185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1183
Number of HSP's successfully gapped: 25
Length of query: 382
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 287
Effective length of database: 3,941,713
Effective search space: 1131271631
Effective search space used: 1131271631
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.3 bits)