RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780224|ref|YP_003064637.1| hypothetical protein
CLIBASIA_00545 [Candidatus Liberibacter asiaticus str. psy62]
(382 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 56.5 bits (136), Expect = 1e-08
Identities = 65/433 (15%), Positives = 121/433 (27%), Gaps = 183/433 (42%)
Query: 60 SLARAIALSDTAPKHVVLALSEDHPDVSGTIILHSPVLKD---NDL---VDLIGRGNKLT 113
S R + LS + +HV+L + S L++ L + ++ T
Sbjct: 5 ST-RPLTLSHGSLEHVLLVPTASFFIAS--------QLQEQFNKILPEPTEGFAADDEPT 55
Query: 114 SI---------FVASRHKLSHVVVENLIETGCVDNIVALLGN--KSVFLSNSLLMQIVER 162
+ +V+S VE + G D ++ L ++ +L + I
Sbjct: 56 TPAELVGKFLGYVSSL-------VEPS-KVGQFDQVLNLCLTEFENCYLEGN---DI--- 101
Query: 163 FCHDASIRNLLSLRTDLSLKARYLLMKSVCNVLSQSKIVQKSITFRRTQILFEESMRVGI 222
H LL D +L L+K+ + ++ + LF
Sbjct: 102 --HAL-AAKLLQ-ENDTTLVKTKELIKNYITARIMA---KRPFDKKSNSALFR------- 147
Query: 223 LEMISHVRDVQA---------------LRELVDLLHDDGQLTPALLIYAIMIGAIDFVSV 267
V + A EL DL + Y +++G D +
Sbjct: 148 -----AVGEGNAQLVAIFGGQGNTDDYFEELRDL-YQ---------TYHVLVG--DLIKF 190
Query: 268 I---LANIAEYSTDRVYSILSTG------------------------GFHVICALYELV- 299
L+ + +T + + G +I + +L
Sbjct: 191 SAETLSELIR-TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG-VIQLAH 248
Query: 300 --------GLSP-EISEIF----------VEATMI-----WREL------AV------GS 323
G +P E+ V A I W A+ G
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 324 --------TVMEPGIIAEKLLER-------MRKRNISGLPAGELLEMV----------ER 358
T + P I+ + L E M +IS L ++ + V ++
Sbjct: 309 RCYEAYPNTSLPPSILEDSL-ENNEGVPSPML--SISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 359 IYLD-VN--RRFV 368
+ + VN + V
Sbjct: 366 VEISLVNGAKNLV 378
Score = 51.1 bits (122), Expect = 5e-07
Identities = 72/446 (16%), Positives = 131/446 (29%), Gaps = 184/446 (41%)
Query: 1 MSVQSFIKWAKNAKLQ----ERISIARILG-----RTWCMEELLDQEKDSLVLAMMHLLD 51
M+ + F K + +A + + I G EEL D L L+
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD-YFEELRD-----LYQTYHVLVG 185
Query: 52 DPSSRVRLSLARAIALSDTAPKH------VV--LALSEDHPDVSGTIILHSPVLKDNDLV 103
D +L+ I + A K ++ L + PD +L P+
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD--YLLSIPI-----SC 238
Query: 104 DLIGRGNKLTSI--FVAS-----------RHKLS----H---VVVENLIETGCVDNIVAL 143
LIG + + +V + R L H +V VA+
Sbjct: 239 PLIG----VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA-----------VAI 283
Query: 144 LGNKS--VFLSNS-----LLMQIVERFCHDA-------------SIRN-------LLSLR 176
S F + +L I R C++A S+ N +LS+
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVR-CYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 177 TDLSLKARYLLMKSVCNVLSQSKIVQKSITFRRT-QILFEESMRVGILEMISHVRDVQAL 235
+L+ + VQ + +T L +V I +L
Sbjct: 343 -NLTQEQ-----------------VQDYVN--KTNSHLPAGK-QVEI-----------SL 370
Query: 236 ----RELVDLLHDDGQLT-PALLIYAIMIGAIDFVSVILANI-AEYSTD--RV-YS---- 282
+ LV ++ P +Y + ++ L A D R+ +S
Sbjct: 371 VNGAKNLV--------VSGPPQSLYGL--------NLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 283 --------ILSTGGFHVICALYELVGLSPEISEIFVEATMIWR--ELA--VGSTVMEPGI 330
+ FH + LV S I++ V+ + + ++ V T G
Sbjct: 415 KFSNRFLPV--ASPFH---SHL-LVPASDLINKDLVKNNVSFNAKDIQIPVYDT--FDG- 465
Query: 331 IAEKLLERMRKRNISGLPAGELLEMV 356
+R + S +++ +
Sbjct: 466 ------SDLRVLSGSISER--IVDCI 483
Score = 45.3 bits (107), Expect = 2e-05
Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 61/169 (36%)
Query: 3 VQSFIKWAKNAKLQE--RISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLS 60
VQ ++ N+ L ++ I+ + G +LV++ P S L+
Sbjct: 349 VQDYVN-KTNSHLPAGKQVEISLVNGA------------KNLVVS-----GPPQSLYGLN 390
Query: 61 L-------------ARAIALSDTAPK--HVVLALSEDHPDVSGTIILHSPVLKD-NDLV- 103
L +R I S+ K + L ++ P HS +L +DL+
Sbjct: 391 LTLRKAKAPSGLDQSR-IPFSERKLKFSNRFLPVAS--P-------FHSHLLVPASDLIN 440
Query: 104 -DLIGRGNKLTS----IFVASRH------KLSHVVVENLIE---TGCVD 138
DL+ + I V LS + E +++ V
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Score = 37.6 bits (87), Expect = 0.004
Identities = 52/345 (15%), Positives = 94/345 (27%), Gaps = 176/345 (51%)
Query: 56 RVRLS----------LARAIALSDT-------------------------APKHV----V 76
R L A AIA +D+ P +
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 77 LALSEDH----PDVSGTIILHSPVL--KD---NDLVDLIGRGNKLTSIFVASRHKL---S 124
L S ++ P SP+L + + D + + N H L
Sbjct: 324 LEDSLENNEGVP---------SPMLSISNLTQEQVQDYVNKTNS---------H-LPAGK 364
Query: 125 HVVVENLIETGCVDNIVALLGNKSVFLSNSLLMQIVERFCHDASIRNLLSLRTDLSLKAR 184
V + +L+ N+V + G SL L+LR KA
Sbjct: 365 QVEI-SLVNGA--KNLV-VSGPPQ-----SLY-----GLN--------LTLRK---AKAP 399
Query: 185 YLLMKSVCNVLSQSKI--VQKSITFR-R----------------TQILFEESMRVGI--- 222
+ L QS+I ++ + F R + ++ ++ ++ +
Sbjct: 400 --------SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 223 ---LEM-ISHVRDVQALRELVDLLHDDGQLTPALLIYAIMIG--------------AIDF 264
+++ + D LR L G ++ ++ I+ +DF
Sbjct: 452 AKDIQIPVYDTFDGSDLRVL------SGSISER-IVDCIIRLPVKWETTTQFKATHILDF 504
Query: 265 --------------------VSVILANIAEYSTDRVYSILSTGGF 289
V VI+A + + D Y GF
Sbjct: 505 GPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY------GF 543
Score = 35.7 bits (82), Expect = 0.020
Identities = 36/212 (16%), Positives = 64/212 (30%), Gaps = 54/212 (25%)
Query: 209 RTQILFEESMRVGIL---EMISHV---RD--VQALRELVDLL-HDDGQLTPALLIYAIMI 259
R L S+ +L ++ + L E + DD TPA L +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL-VGKFL 65
Query: 260 GAI----------DFVSVILANIAEYSTDRVYSILSTGGFHVICALYELVGLSP------ 303
G + F V+ + E+ L H + A +L+ +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENC----YLEGNDIHALAA--KLLQENDTTLVKT 119
Query: 304 -EISEIFVEATMIWRELAVGSTVMEPGIIAEKLLERMRKRNISGLPA---G--------- 350
E+ + ++ A R +A L + + N L A G
Sbjct: 120 KELIKNYITA----RIMAKRPF---DKKSNSALFRAVGEGNAQ-LVAIFGGQGNTDDYFE 171
Query: 351 ELLEMVERIYLDVNRRFVRSMATRSSRLIAAA 382
EL ++ + Y + ++ A S LI
Sbjct: 172 ELRDLYQ-TYHVLVGDLIKFSAETLSELIRTT 202
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 47.3 bits (111), Expect = 6e-06
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 233 QALREL---VDLLHDDGQLTPALLIYAIM 258
QAL++L + L DD PAL I A M
Sbjct: 20 QALKKLQASLKLYADDS--APALAIKATM 46
Score = 31.5 bits (70), Expect = 0.32
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 17/42 (40%)
Query: 38 EKDSLVLAMMHLLDDPSSRVRLSLARAIALSDTAPKHVVLAL 79
EK +L +++ SL + A D+AP LA+
Sbjct: 18 EKQAL------------KKLQASL-KLYA-DDSAPA---LAI 42
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive
structure, iron sulfur proteins, nitrogen fixation;
2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Length = 244
Score = 31.1 bits (70), Expect = 0.40
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 14/94 (14%)
Query: 1 MSVQSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLA--------MMHLLDD 52
+ ++ ++ Q R +A+ L D E + + ++ LL D
Sbjct: 146 IPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHD 205
Query: 53 PSSRVRLSLARAIALSDTAPKHVVLALSEDHPDV 86
P VRL+ A + L E P+V
Sbjct: 206 PDWTVRLAAVEH------ASLEALRELDEPDPEV 233
Score = 28.1 bits (62), Expect = 3.7
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 43 VLAMMHLLDDPSSRVRLSLARAIALSDTAPKHVVLALSEDHPDV 86
V A+ L+ D VR ++A + + + ++ +V
Sbjct: 76 VEALTPLIRDSDEVVRRAVAYR-----LPREQLSALMFDEDREV 114
Score = 27.7 bits (61), Expect = 4.1
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 40 DSLVLAMMHLLDDPSSRVRLSLARAIALS 68
+ L + LD+P VRL++A + ++
Sbjct: 216 EHASLEALRELDEPDPEVRLAIAGRLGIA 244
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 30.1 bits (66), Expect = 0.82
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 34 LLDQEKDSLVLAMMHLLDDPSSRVRLSLARAIAL--SDTAPKHVVLALSEDHPDV 86
L +Q K + LLDD +S R+S AR + L A + + S+ +
Sbjct: 16 LYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIR 70
Score = 27.0 bits (58), Expect = 6.8
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 11/93 (11%)
Query: 2 SVQSFIKWAKNAKLQERISIARILGRTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSL 61
+V+ I++ + R A ILG+ ++ D + L L+D S+ VR +
Sbjct: 55 AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNM---ALNDKSACVRATA 111
Query: 62 ARAIA--------LSDTAPKHVVLALSEDHPDV 86
+ A S + + + +V
Sbjct: 112 IESTAQRCKKNPIYSPKIVEQSQITAFDKSTNV 144
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 29.4 bits (65), Expect = 1.5
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 43 VLAMMHLLDDPSSRVRLSLARAIAL--SDTAPKHVVLALSEDHPDVSGTIILHSPVLKDN 100
V + L D S VR + A A+ + A + ++ AL ++ V + D
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE 75
Query: 101 DLVDLI 106
V+ +
Sbjct: 76 RAVEPL 81
Score = 27.5 bits (60), Expect = 5.1
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 27 RTWCMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAIA-LSDTAPKHVVLALSEDHPD 85
R L + + V ++ L D VR S A A+ + + + L+E
Sbjct: 124 RIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTG 183
Query: 86 V 86
Sbjct: 184 F 184
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 2pf4_A 2iae_A
2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Length = 588
Score = 29.0 bits (63), Expect = 1.6
Identities = 11/96 (11%), Positives = 34/96 (35%), Gaps = 15/96 (15%)
Query: 3 VQSFIKWAKNAKLQERISIARILGRTWCMEELLDQE--KDSLVLAMMHLLDDPSSRVRLS 60
+ + + + R++ + + E+ Q+ ++ ++ + DP + VR +
Sbjct: 482 IPKVLAMSGDPNYLHRMTTLFCINV---LSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538
Query: 61 LARAIA----------LSDTAPKHVVLALSEDHPDV 86
+A+++ L + + DV
Sbjct: 539 VAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDV 574
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway,
isopentenyl transferase, structural genomics, structural
genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens}
SCOP: a.128.1.1
Length = 301
Score = 28.5 bits (62), Expect = 2.6
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 31 MEELLDQEKDSLVLAMMHLLDDPSSRVR--LSLARAIALSDTAPKHVVLALSEDHPDVSG 88
ME+ + + L+ +LL P +VR LS A L K ++ +
Sbjct: 2 MEKTQETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTE------ 55
Query: 89 TIILHSPVLKDNDLVD 104
+LH+ L +D+ D
Sbjct: 56 --MLHNASLLIDDIED 69
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein
binding; HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 28.2 bits (62), Expect = 3.3
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 43 VLAMMHLLDDPSSRVRLSLARAIAL--SDTAPKHVVLALSEDHPDV 86
V + L D S VR + A A+ + A + ++ AL ++ V
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWV 66
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis}
Length = 451
Score = 28.0 bits (62), Expect = 3.5
Identities = 13/81 (16%), Positives = 23/81 (28%)
Query: 270 ANIAEYSTDRVYSILSTGGFHVICALYELVGLSPEISEIFVEATMIWRELAVGSTVMEPG 329
A I ++ + + + L L I ++ MI EL T
Sbjct: 338 ATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEPDA 397
Query: 330 IIAEKLLERMRKRNISGLPAG 350
+ + L + L G
Sbjct: 398 DLTKALCAGAHAAGVIVLSCG 418
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged
helix- turn-helix, UTRA, DNA-binding, transcription
regulation; 1.80A {Mycobacterium smegmatis}
Length = 248
Score = 27.6 bits (60), Expect = 5.4
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 328 PGIIAEKLLERMRKRNISGLPAGELL----EMVERIYLDVNRRFVR 369
P I+ +++ R + G+ G+ E+ E+ +V R VR
Sbjct: 11 PRILKHQVVRAELDRMLDGMRIGDPFPAEREIAEQ--FEVARETVR 54
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix
turn helix motif, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.60.2.7
Length = 98
Score = 27.1 bits (60), Expect = 6.4
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 297 ELVGLSPEISEIFVEATMIWRELAVGSTVME-----PGIIAEKLLERMRKRNISGLPAGE 351
+L L I + + WREL + +E GI K +E K NI GL AG+
Sbjct: 41 DLRSL-QRIGPKKAQLIVGWRELHGPFSQVEDLERVEGI-TGKQMESFLKANILGLAAGQ 98
>3grl_A General vesicular transport factor P115; vesicle transport,
membrane trafficking, membrane tethering, membrane
fusion, snare, RAB GTPase; 2.00A {Bos taurus} PDB:
3gq2_A 2w3c_A
Length = 651
Score = 26.9 bits (59), Expect = 7.5
Identities = 28/235 (11%), Positives = 76/235 (32%), Gaps = 44/235 (18%)
Query: 45 AMMHLLDDPSSRVRLSLARAI-ALSDTAP--------------KHVVLALSEDHPDVSGT 89
++ LL++ VR + + +L ++ L++ +
Sbjct: 126 LLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRND 185
Query: 90 II--LHSPVLKDNDLVDLIGRGN---KLTSIFVASRHKLSHVVVENLIETGCVDNIVALL 144
+ L + + + ++ N +L I + +VVE+ C+ + LL
Sbjct: 186 GVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVED-----CLILLQNLL 240
Query: 145 GNKSVFLSNSLLMQIVERFCHDASIRNLLSLRTDLSLKARYLLMKSVCNVLS-------- 196
N + + ++R + + S + + +L+++ V ++S
Sbjct: 241 KNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGAT 300
Query: 197 ---QSKIVQKSITFRRTQILFEESMRVGILEMISHVRDVQALRELVDLLHDDGQL 248
Q + Q + + IL + IL + + + +++
Sbjct: 301 SSCQKAMFQCGLLQQLCTILMATGVPADILT--------ETINTVSEVIRGCQVN 347
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2
Length = 1230
Score = 26.6 bits (57), Expect = 8.9
Identities = 28/238 (11%), Positives = 68/238 (28%), Gaps = 13/238 (5%)
Query: 30 CMEELLDQEKDSLVLAMMHLLDDPSSRVRLSLARAIA-----LSDTAPKHVVLAL----- 79
LL S++ ++ L P VR A+ + ++ L
Sbjct: 164 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELS 223
Query: 80 SEDHPDVSGTIILHSPVLKDNDLVDLIGRGNKLTSIFVASRHKLSHVVVENLIETGCVDN 139
D + T I + + K+ + V + + E I+ ++
Sbjct: 224 KNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQ--AFES 281
Query: 140 IVALLGNKSVFLSNSLLMQIVERFCHDASIRNLLSLRTDLSLKARYLLMKSVCNVLSQSK 199
V + ++++ ++ +D + + ++ A + S
Sbjct: 282 FVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD 341
Query: 200 IVQKSITFRRTQILFEESMRVGILEMISHVRDVQALRELVDLLHDDGQLTPALLIYAI 257
S RR +++ EM+ L+ + + A + +A
Sbjct: 342 DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK-TVSPALISRFKEREENVKADVFHAY 398
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.324 0.137 0.379
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,102,626
Number of extensions: 143290
Number of successful extensions: 688
Number of sequences better than 10.0: 1
Number of HSP's gapped: 682
Number of HSP's successfully gapped: 57
Length of query: 382
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 288
Effective length of database: 3,414,294
Effective search space: 983316672
Effective search space used: 983316672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.0 bits)