HHsearch alignment for GI: 254780225 and conserved domain: cd00462
>cd00462 PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome. This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts.
Probab=100.00 E-value=0 Score=432.59 Aligned_cols=170 Identities=48% Similarity=0.821 Sum_probs=163.9
Q ss_pred EEEECCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCCHHHHCCHHHHHHHHCCCCC
Q ss_conf 99985878736606741048999999999827985444321278851479748999823340200337999999405756
Q gi|254780225|r 3 IVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAWKKKFHAEISEGQLDGLRTILIKPQTFMNLSGQSLLEVMNFYKLP 82 (189)
Q Consensus 3 livGLGNPG~~y~~TRHNvG~~~ld~l~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~tyMN~SG~sv~~~~~~~~i~ 82 (189)
T Consensus 1 LivGLGNPG~~Y~~TRHNvG~~~ld~l~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kp~tyMN~SG~~v~~~~~~~~i~ 80 (171)
T cd00462 1 LIVGLGNPGPKYENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQTYMNLSGEAVAALANFYKIP 80 (171)
T ss_pred CEEEECCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCEEEEEEECCHHHHCCHHHHHHHHHHCCCC
T ss_conf 98992888244374952689999999999829897766774799999989989999819606652079999999974699
Q ss_pred CCCCEEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHCCCC-CEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 633348984044323382366111588873103333310687-3136675068987767024243789888999999999
Q gi|254780225|r 83 NLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISEKCGK-NYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYFLLPI 161 (189)
Q Consensus 83 ~~~~ilVihDdldL~~G~irlk~~Gg~gGHNGlksI~~~lg~-~f~RlRIGIG~P~~~~~v~~yVL~~f~~~E~~~i~~~ 161 (189)
T Consensus 81 -~~~llVihDdldl~~G~irik~~G~~gGHNGlkSIi~~lg~~~f~RlrIGIG~p~~~~~v~~yVL~~f~~~E~~~l~~~ 159 (171)
T cd00462 81 -PEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHLGTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELLEEA 159 (171)
T ss_pred -HHHEEEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHCCCCCCHHHHHHHHHH
T ss_conf -8898998730557788088707999998899899999859873688998858998888662113899899999999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999998
Q gi|254780225|r 162 IDNIARSLPLLA 173 (189)
Q Consensus 162 i~~~~~~i~~~~ 173 (189)
T Consensus 160 ~~~~~~~~~~~i 171 (171)
T cd00462 160 IEKAADALEDIL 171 (171)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999869