HHsearch alignment for GI: 254780225 and conserved domain: pfam01195
>pfam01195 Pept_tRNA_hydro Peptidyl-tRNA hydrolase.
Probab=100.00 E-value=0 Score=458.37 Aligned_cols=182 Identities=47% Similarity=0.791 Sum_probs=175.6
Q ss_pred EEEECCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCC-CCCCCEEEEEECCCCEEEEEEECCCHHHHCCHHHHHHHHCCCC
Q ss_conf 999858787366067410489999999998279854-4432127885147974899982334020033799999940575
Q gi|254780225|r 3 IVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAW-KKKFHAEISEGQLDGLRTILIKPQTFMNLSGQSLLEVMNFYKL 81 (189)
Q Consensus 3 livGLGNPG~~y~~TRHNvG~~~ld~l~~~~~~~~~-~~k~~~~~~~~~~~~~~v~l~kP~tyMN~SG~sv~~~~~~~~i 81 (189)
T Consensus 1 LIvGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~~v~l~kp~tfMN~SG~~v~~~~~~~~i 80 (184)
T pfam01195 1 LIVGLGNPGPKYENTRHNVGFMVIDRLAERLGVSLKKKKKFKGLIAKGRINGEKVLLLKPQTYMNLSGEAVRAIARFYKI 80 (184)
T ss_pred CEEEECCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCHHHCCHHHHHHHHHHHCC
T ss_conf 98981888144375963789999999999809996646664479999986995899995870564328999999999099
Q ss_pred CCCCCEEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHCCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 663334898404432338236611158887310333331068-7313667506898776702424378988899999999
Q gi|254780225|r 82 PNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISEKCG-KNYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYFLLP 160 (189)
Q Consensus 82 ~~~~~ilVihDdldL~~G~irlk~~Gg~gGHNGlksI~~~lg-~~f~RlRIGIG~P~~~~~v~~yVL~~f~~~E~~~i~~ 160 (189)
T Consensus 81 ~-~~~ilVihDDldl~~G~irlk~~G~~gGHNGlkSIi~~lgt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~E~~~l~~ 159 (184)
T pfam01195 81 P-PEDILVVHDDLDLPLGKLRLKKGGGAGGHNGLKSIISHLGTNDFKRLRIGIGRPPDKNDVADYVLSKFSPEELELLDK 159 (184)
T ss_pred C-HHHEEEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHCCCCCCHHHHHHHHH
T ss_conf 9-899799862465625785256799898978888999983977634799862889887866354289999999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9999999999998099899999863
Q gi|254780225|r 161 IIDNIARSLPLLAKREDVSFLNHIV 185 (189)
Q Consensus 161 ~i~~~~~~i~~~~~~~~~~~mn~~n 185 (189)
T Consensus 160 ~i~~~~~~i~~~i~~~~~~amn~~n 184 (184)
T pfam01195 160 AIEKAADALEDLIEGGFDKAMNRFN 184 (184)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHC
T ss_conf 9999999999999779999998659