Query gi|254780225|ref|YP_003064638.1| peptidyl-tRNA hydrolase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 189 No_of_seqs 138 out of 2149 Neff 6.3 Searched_HMMs 23785 Date Mon May 23 23:55:58 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780225.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2pth_A Peptidyl-tRNA hydrolase 100.0 0 0 471.9 18.4 188 1-189 2-192 (193) 2 2z2i_A PTH, peptidyl-tRNA hydr 100.0 0 0 468.8 17.5 185 2-187 5-191 (191) 3 1ryb_A CRS2; alpha-beta, hydro 100.0 0 0 461.1 16.9 186 2-188 18-205 (205) 4 1cfz_A Hydrogenase 2 maturatio 49.5 14 0.00058 17.0 4.0 134 2-172 3-152 (162) 5 2inw_A Putative structural pro 48.5 14 0.0006 16.9 3.8 31 146-176 50-80 (133) 6 2jva_A Peptidyl-tRNA hydrolase 47.3 7.8 0.00033 18.5 1.9 27 87-113 1-29 (108) 7 2ea9_A JW2626, hypothetical pr 45.0 14 0.00057 17.0 2.9 31 146-176 36-66 (105) 8 2bb3_A Cobalamin biosynthesis 41.9 7.7 0.00032 18.5 1.2 16 1-18 23-38 (221) 9 1c8b_A Spore protease; novel f 41.8 9.1 0.00038 18.0 1.6 96 2-113 115-225 (371) 10 1am7_A Lysozyme; glycosidase, 41.6 18 0.00077 16.2 4.3 40 147-186 83-122 (158) 11 2jy9_A Putative tRNA hydrolase 35.8 11 0.00044 17.7 1.2 27 88-114 2-30 (148) 12 3hzu_A Thiosulfate sulfurtrans 27.3 31 0.0013 14.8 3.0 52 45-97 67-123 (318) 13 1uz5_A MOEA protein, 402AA lon 23.3 37 0.0016 14.4 2.2 78 60-138 200-288 (402) 14 1uar_A Rhodanese; sulfurtransf 22.9 38 0.0016 14.3 2.7 49 46-95 36-89 (285) 15 2e85_A Hydrogenase 3 maturatio 22.8 23 0.00097 15.6 1.0 131 2-173 6-146 (159) 16 2fkc_A R.HINP1I restriction en 21.4 26 0.0011 15.3 1.0 61 115-175 99-167 (247) No 1 >2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli K12} SCOP: c.56.3.1 Probab=100.00 E-value=0 Score=471.93 Aligned_cols=188 Identities=36% Similarity=0.592 Sum_probs=181.2 Q ss_pred CEEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCC-CCCCCEEEEEECCCCEEEEEEECCCHHHHCCHHHHHHHHCC Q ss_conf 98999858787366067410489999999998279854-44321278851479748999823340200337999999405 Q gi|254780225|r 1 MFIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAW-KKKFHAEISEGQLDGLRTILIKPQTFMNLSGQSLLEVMNFY 79 (189) Q Consensus 1 m~livGLGNPG~~y~~TRHNvG~~~ld~l~~~~~~~~~-~~k~~~~~~~~~~~~~~v~l~kP~tyMN~SG~sv~~~~~~~ 79 (189) |+|||||||||++|++||||||||++|.|++.+++++. ++++.+.+++..+.+.+|+|+||+||||+||+||++++++| T Consensus 2 mkLivGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~ 81 (193) T 2pth_A 2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF 81 (193) T ss_dssp CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH T ss_pred EEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCEECCCCHHHHHHHHHH T ss_conf 79999768995122718507899999999998499823355542588888888926999956865658526599999984 Q ss_pred CCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHCCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 756633348984044323382366111588873103333310687--313667506898776702424378988899999 Q gi|254780225|r 80 KLPNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISEKCGK--NYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYF 157 (189) Q Consensus 80 ~i~~~~~ilVihDdldL~~G~irlk~~Gg~gGHNGlksI~~~lg~--~f~RlRIGIG~P~~~~~v~~yVL~~f~~~E~~~ 157 (189) +++ +++|+|||||+|||+|++|+|.+||+|||||||||+++||+ +|+|||||||||+.++++++|||++|+++|++. T Consensus 82 ~i~-~~~ilVihDDldlp~G~irlk~~Gs~gGHNGlkSI~~~LG~~~~f~RlRIGIGrp~~~~~v~~yVL~~fs~~E~~~ 160 (193) T 2pth_A 82 RIN-PDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKL 160 (193) T ss_dssp TCC-GGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHH T ss_pred CCC-HHHEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 999-7899999655657888712047997777898689999858975624388750899887863020379989999999 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC Q ss_conf 99999999999999980998999998633589 Q gi|254780225|r 158 LLPIIDNIARSLPLLAKREDVSFLNHIVSVRK 189 (189) Q Consensus 158 i~~~i~~~~~~i~~~~~~~~~~~mn~~n~~~k 189 (189) ++++++.++++++.++.++++.|||++|+++. T Consensus 161 l~~~i~~~~~~l~~~i~~g~~~amn~~Ns~k~ 192 (193) T 2pth_A 161 IDEAIDEAARCTEMWFTDGLTKATNRLHAFKA 192 (193) T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTT T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC T ss_conf 99999999999999997699999999847377 No 2 >2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis H37RV} PDB: 2z2j_A 2z2k_A 2jrc_A 3kjz_A Probab=100.00 E-value=0 Score=468.79 Aligned_cols=185 Identities=39% Similarity=0.669 Sum_probs=178.3 Q ss_pred EEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCC-CCCCEEEEEECCCCEEEEEEECCCHHHHCCHHHHHHHHCCC Q ss_conf 89998587873660674104899999999982798544-43212788514797489998233402003379999994057 Q gi|254780225|r 2 FIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAWK-KKFHAEISEGQLDGLRTILIKPQTFMNLSGQSLLEVMNFYK 80 (189) Q Consensus 2 ~livGLGNPG~~y~~TRHNvG~~~ld~l~~~~~~~~~~-~k~~~~~~~~~~~~~~v~l~kP~tyMN~SG~sv~~~~~~~~ 80 (189) ||||||||||++|++||||||||++|.||+.+++++.. +++.+.++++.+.+.+|+|+||+||||+||.+|++++++|+ T Consensus 5 ~livGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~~ 84 (191) T 2z2i_A 5 LLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYS 84 (191) T ss_dssp EEEEECCCCSHHHHTBGGGHHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHHTT T ss_pred EEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCEEEEEECCCHHHHCCCHHHHHHHHHCC T ss_conf 69998289951127093048999999999984889760134772788788899799994481887716753599988348 Q ss_pred CCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHCCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 5663334898404432338236611158887310333331068-731366750689877670242437898889999999 Q gi|254780225|r 81 LPNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISEKCG-KNYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYFLL 159 (189) Q Consensus 81 i~~~~~ilVihDdldL~~G~irlk~~Gg~gGHNGlksI~~~lg-~~f~RlRIGIG~P~~~~~v~~yVL~~f~~~E~~~i~ 159 (189) ++ +++++|||||+|||+|++|+|.+||+|||||||||+++|| ++|+|||||||||+.++++++|||++|+++|++.++ T Consensus 85 i~-~~~ilVihDDldlp~G~vrlk~~Gs~gGHNGlkSIi~~Lgt~~f~RlRIGIGrp~~~~~~~~yVL~~f~~~E~~~l~ 163 (191) T 2z2i_A 85 VA-PANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAALGTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVP 163 (191) T ss_dssp CC-GGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHHTCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHTTHH T ss_pred CC-HHHEEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCHHHHHHHH T ss_conf 99-89979995136786763998459988898862448988299877617876489976576213416899989999999 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCC Q ss_conf 9999999999999809989999986335 Q gi|254780225|r 160 PIIDNIARSLPLLAKREDVSFLNHIVSV 187 (189) Q Consensus 160 ~~i~~~~~~i~~~~~~~~~~~mn~~n~~ 187 (189) ++++.++++++.+++++++.|||++|++ T Consensus 164 ~~~~~~~~~~~~~~~~g~~~amn~~Ns~ 191 (191) T 2z2i_A 164 TICEQAADATELLIEQGMEPAQNRVHAW 191 (191) T ss_dssp HHHHHHHHHHHHHHHC------------ T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHCCC T ss_conf 9999999999999977999999987299 No 3 >1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A Probab=100.00 E-value=0 Score=461.11 Aligned_cols=186 Identities=32% Similarity=0.573 Sum_probs=180.2 Q ss_pred EEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCCHHHHCCHHHHHHHHCCCC Q ss_conf 89998587873660674104899999999982798544432127885147974899982334020033799999940575 Q gi|254780225|r 2 FIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAWKKKFHAEISEGQLDGLRTILIKPQTFMNLSGQSLLEVMNFYKL 81 (189) Q Consensus 2 ~livGLGNPG~~y~~TRHNvG~~~ld~l~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~tyMN~SG~sv~~~~~~~~i 81 (189) ||||||||||++|++||||||||++|.||+++++++++.+..+.++...+.+.+|+|+||+||||+||.||++++++|++ T Consensus 18 ~LIvGLGNPG~~Y~~TRHNiG~~~ld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kp~tyMN~SG~~v~~~~~~~~i 97 (205) T 1ryb_A 18 WLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQV 97 (205) T ss_dssp EEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTTC T ss_pred EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHCCCEEEEEEECCCEEEECCCCCHHHCCCHHHHHHHHHCCC T ss_conf 69998489970115080069999999999981989670000627899986596699915993654255168899988089 Q ss_pred CCCCCEEEEEECCCCCCCCEEEECCCCCCCCCHHHHHHHCC-CC-CEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 66333489840443233823661115888731033333106-87-31366750689877670242437898889999999 Q gi|254780225|r 82 PNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISEKC-GK-NYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYFLL 159 (189) Q Consensus 82 ~~~~~ilVihDdldL~~G~irlk~~Gg~gGHNGlksI~~~l-g~-~f~RlRIGIG~P~~~~~v~~yVL~~f~~~E~~~i~ 159 (189) + +++++|||||+|||+|++|+|.+||+|||||||||+++| |+ +|+|||||||||+++.++++|||++|+++|++.|+ T Consensus 98 ~-~~~ilVihDDldl~~G~vrik~gGs~gGHNGlkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVLskF~~~E~~~l~ 176 (205) T 1ryb_A 98 P-LRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQID 176 (205) T ss_dssp C-GGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHHHHH T ss_pred C-CHHEEEEECCCCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCEECCCCCCCCCHHHHCCCCCCHHHHHHHH T ss_conf 8-204589950123447977541588888788777799870697653504721399987787500048998999999999 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCC Q ss_conf 99999999999998099899999863358 Q gi|254780225|r 160 PIIDNIARSLPLLAKREDVSFLNHIVSVR 188 (189) Q Consensus 160 ~~i~~~~~~i~~~~~~~~~~~mn~~n~~~ 188 (189) ++++.++++++.++.++++.|||++|+++ T Consensus 177 ~~i~~~~~~i~~ii~~g~~~amn~~N~~~ 205 (205) T 1ryb_A 177 TALEQGVDAVRTLVLKGFSGSTERFNLVQ 205 (205) T ss_dssp HHHHHHHHHHHHHHHHC-----CCCCCCC T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHCCC T ss_conf 99999999999999869999999873889 No 4 >1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A Probab=49.54 E-value=14 Score=16.99 Aligned_cols=134 Identities=20% Similarity=0.302 Sum_probs=68.3 Q ss_pred EEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCCHHHHCCHHHHHHHHCCCC Q ss_conf 89998587873660674104899999999982798544432127885147974899982334020033799999940575 Q gi|254780225|r 2 FIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAWKKKFHAEISEGQLDGLRTILIKPQTFMNLSGQSLLEVMNFYKL 81 (189) Q Consensus 2 ~livGLGNPG~~y~~TRHNvG~~~ld~l~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~tyMN~SG~sv~~~~~~~~i 81 (189) .+|+|+|||= ..=--+|..+++.|.+++..+. + |.++.-.| .|.-+...+ T Consensus 3 ilVlGiGN~l----~gDDgvG~~v~~~L~~~~~~~~---------------~--v~v~d~gt----~~~~ll~~l----- 52 (162) T 1cfz_A 3 ILVLGVGNIL----LTDEAIGVRIVEALEQRYILPD---------------Y--VEILDGGT----AGMELLGDM----- 52 (162) T ss_dssp EEEEEESCTT----BGGGGHHHHHHHHHHHHEECCT---------------T--EEEEEEET----CCGGGHHHH----- T ss_pred EEEEEECCCC----CCCCCHHHHHHHHHHHHCCCCC---------------C--EEEEECCC----CHHHHHHHH----- T ss_conf 9999989854----2617089999999986078999---------------8--59999998----889999997----- Q ss_pred CCCCCEEEEEECC---CCCCCCEEEEC--------CCCCCCCC-HHHHHHHC---CCCCEEEEEE-CCCCCCCCCCCCCC Q ss_conf 6633348984044---32338236611--------15888731-03333310---6873136675-06898776702424 Q gi|254780225|r 82 PNLENYLVIHDDL---DLDFGTLRLKT--------GGGDAGHN-GLKSISEK---CGKNYKRLRI-GIGRPPDTAHIIRH 145 (189) Q Consensus 82 ~~~~~ilVihDdl---dL~~G~irlk~--------~Gg~gGHN-GlksI~~~---lg~~f~RlRI-GIG~P~~~~~v~~y 145 (189) ...+.+ ++-|.. ..|.|.++... ..+...|. |+.++... ++..-.++.+ ||- |.+- +| T Consensus 53 ~~~~~v-iiVDA~~~~~~~pg~v~~~~~~~~~~~~~~~~S~H~~~l~~~L~~~~~~g~~p~~v~lvgie-~~~~----~~ 126 (162) T 1cfz_A 53 ANRDHL-IIADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGVI-PESL----EP 126 (162) T ss_dssp SSCSEE-EEEEECCSSCSCTTCEEEEETTHHHHHHCCSSCHHHHHHHHHHHHHHHTTCCCSEEEEEEEC-CSCC----CS T ss_pred CCCCEE-EEEEEEECCCCCCEEEEEECCHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEE-EEEC----CC T ss_conf 199869-99997633799985999964201331026675877599999999999808999839999999-7573----68 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 378988899999999999999999999 Q gi|254780225|r 146 VLGNFSSPERYFLLPIIDNIARSLPLL 172 (189) Q Consensus 146 VL~~f~~~E~~~i~~~i~~~~~~i~~~ 172 (189) =...|++=+..++.+.+.+.+.+..+ T Consensus 127 -g~~LS~~v~~av~~~~~~i~~~l~~~ 152 (162) T 1cfz_A 127 -HIGLTPTVEAMIEPALEQVLAALRES 152 (162) T ss_dssp -BSSCCHHHHTTHHHHHHHHHHHHHTT T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf -99979999999999999999999984 No 5 >2inw_A Putative structural protein; Q83JN9 X-RAY NESG SFR137, structural genomics, PSI-2, protei structure initiative; 1.50A {Shigella flexneri} SCOP: d.110.8.1 PDB: 2h28_A Probab=48.46 E-value=14 Score=16.88 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=27.3 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 3789888999999999999999999998099 Q gi|254780225|r 146 VLGNFSSPERYFLLPIIDNIARSLPLLAKRE 176 (189) Q Consensus 146 VL~~f~~~E~~~i~~~i~~~~~~i~~~~~~~ 176 (189) +-+.|+++|...+++++..+.+.+|..+..+ T Consensus 50 i~G~Fs~~~~~~Ld~aFP~~ikqLE~ml~sG 80 (133) T 2inw_A 50 IRGRFSDVDAYHLDQAFPLLMKQLELMLTGG 80 (133) T ss_dssp EESCCCHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 0574599999889989999999999986337 No 6 >2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas syringae PV} Probab=47.27 E-value=7.8 Score=18.47 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=20.8 Q ss_pred EEEEEECCCCCCCCEEEEC--CCCCCCCC Q ss_conf 4898404432338236611--15888731 Q gi|254780225|r 87 YLVIHDDLDLDFGTLRLKT--GGGDAGHN 113 (189) Q Consensus 87 ilVihDdldL~~G~irlk~--~Gg~gGHN 113 (189) +|.|-+++.+|.-.+++++ ++|.||+| T Consensus 1 ml~i~~~i~Ip~~el~~~f~RSSGPGGQ~ 29 (108) T 2jva_A 1 MLVISNNVHLPDAEIELTAIRAQGAGGQN 29 (108) T ss_dssp CEECSSSCEECGGGEEEEECCCTTCSSSS T ss_pred CCCCCCCCEECHHHEEEEEEECCCCCCCC T ss_conf 93417875098799389999878998765 No 7 >2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} SCOP: d.110.8.1 PDB: 2jn7_A Probab=45.01 E-value=14 Score=17.01 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=27.1 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 3789888999999999999999999998099 Q gi|254780225|r 146 VLGNFSSPERYFLLPIIDNIARSLPLLAKRE 176 (189) Q Consensus 146 VL~~f~~~E~~~i~~~i~~~~~~i~~~~~~~ 176 (189) +-+.|+++|...+++++....+.+|..+..+ T Consensus 36 i~G~Fs~~~~~~Ld~aFP~~ikqlE~ml~sG 66 (105) T 2ea9_A 36 ITGKFSDAECPKLDVVFPHFISQIESMLTTG 66 (105) T ss_dssp EESCCCTTHHHHHHHHHHHHHHHHHHHHHHS T ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 3451699999889989999999999986459 No 8 >2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CBIE); beta, alpha-beta-alpha sandwich, structural genomics, PSI; HET: SAH; 2.27A {Archaeoglobus fulgidus dsm 4304} SCOP: c.90.1.1 Probab=41.89 E-value=7.7 Score=18.50 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=12.7 Q ss_pred CEEEEECCCCCHHHHCCC Q ss_conf 989998587873660674 Q gi|254780225|r 1 MFIVAGLGNPGHEYCENR 18 (189) Q Consensus 1 m~livGLGNPG~~y~~TR 18 (189) |+-+||+| ||+.| -|. T Consensus 23 ~lyiVG~G-pG~~~-LT~ 38 (221) T 2bb3_A 23 MIWIVGSG-TCRGQ-TTE 38 (221) T ss_dssp EEEEEECB-SSTTC-CCH T ss_pred EEEEEECC-CCCHH-HHH T ss_conf 89999778-99778-999 No 9 >1c8b_A Spore protease; novel fold, hydrolase; 3.00A {Bacillus megaterium} SCOP: c.56.1.2 Probab=41.76 E-value=9.1 Score=18.04 Aligned_cols=96 Identities=19% Similarity=0.288 Sum_probs=50.9 Q ss_pred EEEEECCCCCHHHHCCCCCHHHHHHHHHHH-HHCCCCCCCCCCEEEEEECCCCEEEEEEEC----CCHHHHCCHHHHHHH Q ss_conf 899985878736606741048999999999-827985444321278851479748999823----340200337999999 Q gi|254780225|r 2 FIVAGLGNPGHEYCENRHNIGFMCIDRIHS-FHFFPAWKKKFHAEISEGQLDGLRTILIKP----QTFMNLSGQSLLEVM 76 (189) Q Consensus 2 ~livGLGNPG~~y~~TRHNvG~~~ld~l~~-~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP----~tyMN~SG~sv~~~~ 76 (189) .|+|||||. .-|--..|-.+++.+.- ++-......... . .-.+|--+-| +|-| +++.-|+.++ T Consensus 115 vLVVGLGN~----~vTPDALGP~vv~~l~VTRHL~~~~pe~~~----~---g~r~VsaiaPGVmg~TGi-ET~EIIkgiv 182 (371) T 1c8b_A 115 CLVVGLGNL----SVTPDALGPKAVDNLLITRHLFELQPESVQ----D---GFRPVSAIVPGVMGMTGI-ETSDIIFGVV 182 (371) T ss_dssp EEEEECSCS----SSGGGCHHHHHHTTCCCCHHHHHHSCCSSC----S---SCCCEEEECSGGGCCCSS-CHHHHHHHHH T ss_pred EEEEECCCC----CCCCCCCCHHEECCEEEEHHHHHHCCHHHC----C---CCCEEEEECCCCCCCCCC-CHHHHHHHHH T ss_conf 799967887----778656471010346324304654745450----7---861357885775502311-4999999998 Q ss_pred HCCCCCCCCCEEEEEECCCCCC-----CCEEEE-----CCCCCCCCC Q ss_conf 4057566333489840443233-----823661-----115888731 Q gi|254780225|r 77 NFYKLPNLENYLVIHDDLDLDF-----GTLRLK-----TGGGDAGHN 113 (189) Q Consensus 77 ~~~~i~~~~~ilVihDdldL~~-----G~irlk-----~~Gg~gGHN 113 (189) ...| | +++|+-|-|.-.- -+|.+. +|.|-|-|+ T Consensus 183 ~~~k---P-DlVIaIDALAaRs~~Rln~TIQIsDTGI~PGSGVGN~R 225 (371) T 1c8b_A 183 KKVN---P-DFIIAIDALAARSIERVNATIQISDSGIHPGSGVGNKR 225 (371) T ss_dssp HHHC---C-SEEEEEEEECCSSGGGSSSEEEEETTCBCSCSSSSCCC T ss_pred HHHC---C-CEEEEECHHHCCCHHHCCCEEEECCCCCCCCCCCCCCC T ss_conf 7528---9-99999422125860114674787687868887867654 No 10 >1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A* Probab=41.60 E-value=18 Score=16.24 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=30.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC Q ss_conf 7898889999999999999999999980998999998633 Q gi|254780225|r 147 LGNFSSPERYFLLPIIDNIARSLPLLAKREDVSFLNHIVS 186 (189) Q Consensus 147 L~~f~~~E~~~i~~~i~~~~~~i~~~~~~~~~~~mn~~n~ 186 (189) |.+|+|+.++.+-..+-.-..++..+..+.+..+|+++.. T Consensus 83 l~~F~P~~QD~~a~~Ll~~r~a~~~~~~G~~~~a~~~la~ 122 (158) T 1am7_A 83 LKDFSPKSQDAVALQQIKERGALPMIDRGDIRQAIDRCSN 122 (158) T ss_dssp CCCCCHHHHHHHHHHHHHHTTCHHHHHHTCHHHHHHHHTT T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHH T ss_conf 9999858899999999997264587877689999998603 No 11 >2jy9_A Putative tRNA hydrolase domain; GFT protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} Probab=35.77 E-value=11 Score=17.66 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=19.6 Q ss_pred EEEEECCCCCCCCEEEEC--CCCCCCCCH Q ss_conf 898404432338236611--158887310 Q gi|254780225|r 88 LVIHDDLDLDFGTLRLKT--GGGDAGHNG 114 (189) Q Consensus 88 lVihDdldL~~G~irlk~--~Gg~gGHNG 114 (189) |.|-+.+.+|.-.+++++ ++|.||+|= T Consensus 2 ~~i~~~i~Ip~~ei~~~f~RSsGPGGQnV 30 (148) T 2jy9_A 2 IAISRTVSIADNELEITAIRAQGAGGQHV 30 (148) T ss_dssp BCCSSSCCBCSTTCEEEEECCSCCCSSCS T ss_pred CCCCCCCCCCHHHEEEEEEECCCCCCCCH T ss_conf 33578771787990788887689987631 No 12 >3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, structural genomics; 2.10A {Mycobacterium tuberculosis} Probab=27.31 E-value=31 Score=14.82 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=35.7 Q ss_pred EEEEECCCCEEEE-----EEECCCHHHHCCHHHHHHHHCCCCCCCCCEEEEEECCCCC Q ss_conf 7885147974899-----9823340200337999999405756633348984044323 Q gi|254780225|r 45 EISEGQLDGLRTI-----LIKPQTFMNLSGQSLLEVMNFYKLPNLENYLVIHDDLDLD 97 (189) Q Consensus 45 ~~~~~~~~~~~v~-----l~kP~tyMN~SG~sv~~~~~~~~i~~~~~ilVihDdldL~ 97 (189) .|.++.|.+.-.+ +-.|...|=.+...+.++++..+|. .++-+|||||-+.. T Consensus 67 ~Y~~gHIPGAi~id~~~~~~~~~~~~l~~~e~~~~~l~~lGI~-~~~~VVvY~~~~~~ 123 (318) T 3hzu_A 67 LYDVGHIPGAVKIDWHTDLNDPRVRDYINGEQFAELMDRKGIA-RDDTVVIYGDKSNW 123 (318) T ss_dssp SGGGCBCTTEEECCHHHHHBCSSSSSBCCHHHHHHHHHHTTCC-TTCEEEEECSGGGH T ss_pred HHHHCCCCCCEEECHHHHCCCCCCCCCCCHHHHHHHHHHCCCC-CCCEEEEEECCCCC T ss_conf 9972859998581845544599887899999999998862887-89669999077774 No 13 >1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 Probab=23.28 E-value=37 Score=14.36 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=55.7 Q ss_pred ECCCHHHHCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCC---------CEEEECCCCCCC-CCHHHHHHHCCCC-CEEE Q ss_conf 2334020033799999940575663334898404432338---------236611158887-3103333310687-3136 Q gi|254780225|r 60 KPQTFMNLSGQSLLEVMNFYKLPNLENYLVIHDDLDLDFG---------TLRLKTGGGDAG-HNGLKSISEKCGK-NYKR 128 (189) Q Consensus 60 kP~tyMN~SG~sv~~~~~~~~i~~~~~ilVihDdldL~~G---------~irlk~~Gg~gG-HNGlksI~~~lg~-~f~R 128 (189) +|---.|-.+..+.++++.+.+ ....+-++-||.+.-.- .+=+-.||.+.| +-=++++.+.+|. .|+| T Consensus 200 ~~g~i~dsN~~~l~a~l~~~G~-~~~~~~~~~D~~~~i~~~i~~~~~~~DivIttGG~S~G~~D~v~~~l~~~G~~~f~~ 278 (402) T 1uz5_A 200 KPGQIYDINGRALCDAINELGG-EGIFMGVARDDKESLKALIEKAVNVGDVVVISGGASGGTKDLTASVIEELGEVKVHG 278 (402) T ss_dssp CTTCEECCHHHHHHHHHHHHTS-EEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC-----CHHHHHHHHHSEEEEEC T ss_pred CCCCEEECCHHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEE T ss_conf 9996844559999999986697-277626668568999998763222354478754755885234999999759779976 Q ss_pred EEECCCCCCC Q ss_conf 6750689877 Q gi|254780225|r 129 LRIGIGRPPD 138 (189) Q Consensus 129 lRIGIG~P~~ 138 (189) +++-=|+|.. T Consensus 279 v~~kPGkP~~ 288 (402) T 1uz5_A 279 IAIQPGKPTI 288 (402) T ss_dssp BSEESCTTCE T ss_pred EEEECCCCEE T ss_conf 7687067558 No 14 >1uar_A Rhodanese; sulfurtransferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2 Probab=22.86 E-value=38 Score=14.31 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=34.2 Q ss_pred EEEECCCCEEEE-----EEECCCHHHHCCHHHHHHHHCCCCCCCCCEEEEEECCC Q ss_conf 885147974899-----98233402003379999994057566333489840443 Q gi|254780225|r 46 ISEGQLDGLRTI-----LIKPQTFMNLSGQSLLEVMNFYKLPNLENYLVIHDDLD 95 (189) Q Consensus 46 ~~~~~~~~~~v~-----l~kP~tyMN~SG~sv~~~~~~~~i~~~~~ilVihDdld 95 (189) |..+.|.+.-.+ +..|.+.|--+...+.++++..+|. .++.+|+||+-+ T Consensus 36 Y~~gHIPGAi~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi~-~~~~VVvY~~~~ 89 (285) T 1uar_A 36 YDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGIS-NDTTVVLYGDKN 89 (285) T ss_dssp HHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCC-TTCEEEEECHHH T ss_pred HHHCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCC-CCCEEEEEECCC T ss_conf 973859998087902432589865676799999999870807-997589992456 No 15 >2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A Probab=22.79 E-value=23 Score=15.62 Aligned_cols=131 Identities=16% Similarity=0.201 Sum_probs=65.7 Q ss_pred EEEEECCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECCCHHHHCCHHHHHHHHCCCC Q ss_conf 89998587873660674104899999999982798544432127885147974899982334020033799999940575 Q gi|254780225|r 2 FIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAWKKKFHAEISEGQLDGLRTILIKPQTFMNLSGQSLLEVMNFYKL 81 (189) Q Consensus 2 ~livGLGNPG~~y~~TRHNvG~~~ld~l~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~tyMN~SG~sv~~~~~~~~i 81 (189) -||+|+|||-. .=-=+|..+++.|.+.. .. +.. ++--. ..|..+...+..++ T Consensus 6 ~LVlGiGN~lr----gDDgvG~~v~e~L~~~~-----~~------------~v~--~id~g----~~~~~l~~~l~~~~- 57 (159) T 2e85_A 6 DVLLCVGNSMM----GDDGAGPLLAEKCAAAP-----KG------------NWV--VIDGG----SAPENDIVAIRELR- 57 (159) T ss_dssp EEEEEECCGGG----GGGGHHHHHHHHHHHSC-----CT------------TCE--EEECT----TCSGGGHHHHHHHC- T ss_pred EEEEEECCCCC----CCCCHHHHHHHHHHHHC-----CC------------CEE--EEECC----CCHHHHHHHHHHCC- T ss_conf 89999898630----62719999999998658-----99------------889--99899----78899999998479- Q ss_pred CCCCCEEEEEE--CCCCCCCCEEEEC------CCCCCCCC-HHHHHHHCCCCCEEEE-EECCCCCCCCCCCCCCCCCCCC Q ss_conf 66333489840--4432338236611------15888731-0333331068731366-7506898776702424378988 Q gi|254780225|r 82 PNLENYLVIHD--DLDLDFGTLRLKT------GGGDAGHN-GLKSISEKCGKNYKRL-RIGIGRPPDTAHIIRHVLGNFS 151 (189) Q Consensus 82 ~~~~~ilVihD--dldL~~G~irlk~------~Gg~gGHN-GlksI~~~lg~~f~Rl-RIGIG~P~~~~~v~~yVL~~f~ 151 (189) + +.+|+-| +...++|+++.-. ..+...|+ ++.++.+.++...+++ =+||- | ..- +| =...| T Consensus 58 --~-d~vI~VDA~~~g~~pG~i~~~~~~~~~~~~~~s~H~~~l~~ll~~l~~~~p~~~llgI~-~-~~~---~~-g~~LS 128 (159) T 2e85_A 58 --P-TRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLKEDIGEVIFLGIQ-P-DIV---GF-YYPMT 128 (159) T ss_dssp --C-SEEEEEEECCCSSCTTCEEECCHHHHHHTTCBCTTCCBHHHHHHHHHHHHSEEEEEEEC-C-SCC---CT-TCCCC T ss_pred --C-CEEEEEEEECCCCCCCEEEEECHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEE-E-EEE---CC-CCCCC T ss_conf --8-88999975207899857999771451354684788242999999971899968999989-8-670---68-99979 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999999999999999998 Q gi|254780225|r 152 SPERYFLLPIIDNIARSLPLLA 173 (189) Q Consensus 152 ~~E~~~i~~~i~~~~~~i~~~~ 173 (189) ++=+ ..++.+++.+..|+ T Consensus 129 ~~v~----~av~~~~~~l~~~~ 146 (159) T 2e85_A 129 QPIK----DAVETVYQRLEGWE 146 (159) T ss_dssp HHHH----HHHHHHHTTSTTCC T ss_pred HHHH----HHHHHHHHHHHHHH T ss_conf 9999----99999999999997 No 16 >2fkc_A R.HINP1I restriction endonuclease; protein dimerizaton, DNA superhelix, protein-DNA-metal ION complex, hydrolase/DNA complex; 2.39A {Haemophilus influenzae} PDB: 1ynm_A 2fkh_B 2fl3_A 2flc_A Probab=21.42 E-value=26 Score=15.33 Aligned_cols=61 Identities=23% Similarity=0.225 Sum_probs=31.0 Q ss_pred HHHHHHCCC--CC-EEEEEECCCCC-CCC---CCCCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHCC Q ss_conf 333331068--73-13667506898-776---70242437898889999999999-9999999999809 Q gi|254780225|r 115 LKSISEKCG--KN-YKRLRIGIGRP-PDT---AHIIRHVLGNFSSPERYFLLPII-DNIARSLPLLAKR 175 (189) Q Consensus 115 lksI~~~lg--~~-f~RlRIGIG~P-~~~---~~v~~yVL~~f~~~E~~~i~~~i-~~~~~~i~~~~~~ 175 (189) |++-.+.+. .+ |-=|+=.+|.- |.+ .+-...-++.||.+|++.+-..+ ..-...++.++.+ T Consensus 99 l~~y~e~~~~p~~i~~lLk~~~ge~~~~~~~~k~~rrmfi~efS~~eQd~iln~~n~nk~~Iledil~G 167 (247) T 2fkc_A 99 LAHYQEMWKFDDNLLRILRHFTGELPPYHSNTKDKRRMFMTEFSQEEQNIVLNWLEKNRVLVLTDILRG 167 (247) T ss_dssp HHHHHHHHCCCHHHHHHHHHHHTSSCCSSSCSSCSSCCCGGGSCHHHHHHHHHHHHHTHHHHHHHHHTC T ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999998855987899999998444686677865442210000048779999999988099999999825 Done!