RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780225|ref|YP_003064638.1| peptidyl-tRNA hydrolase
[Candidatus Liberibacter asiaticus str. psy62]
         (189 letters)



>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli
           [TaxId: 562]}
          Length = 193

 Score =  144 bits (365), Expect = 3e-36
 Identities = 67/192 (34%), Positives = 94/192 (48%), Gaps = 4/192 (2%)

Query: 1   MFIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFP-AWKKKFHAEISEGQLDGLRTILI 59
           + ++ GL NPG EY   RHN G   +D +      P   + KF    S   L G    L+
Sbjct: 2   IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLL 61

Query: 60  KPQTFMNLSGQSLLEVMNFYKLPNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSIS 119
            P TFMNLSG+++  + +F+++   +  LV HD+LDL  G  + K GGG  GHNGLK I 
Sbjct: 62  VPTTFMNLSGKAVAAMASFFRIN-PDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDII 120

Query: 120 EKC--GKNYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYFLLPIIDNIARSLPLLAKRED 177
            K     N+ RLRIGIG P D   ++  VLG     E+  +   ID  AR   +      
Sbjct: 121 SKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGL 180

Query: 178 VSFLNHIVSVRK 189
               N + + + 
Sbjct: 181 TKATNRLHAFKA 192


>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor
           Crs2 {Maize (Zea mays) [TaxId: 4577]}
          Length = 191

 Score =  135 bits (341), Expect = 2e-33
 Identities = 57/185 (30%), Positives = 98/185 (52%), Gaps = 3/185 (1%)

Query: 2   FIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAWKKKFHAEISEGQLDGLRTILIKP 61
           +++AGLGNPG++Y   RHN+GF  +DRI +         +  + +  G +  +  +++KP
Sbjct: 4   WLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKP 63

Query: 62  QTFMNLSGQSLLEVMNFYKLPNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISEK 121
           Q++MN SG+++  +  +Y++  L + L+I+DD  L  G LRL+  GG   HNGL+++ E 
Sbjct: 64  QSYMNYSGEAIGPLAAYYQV-PLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 122

Query: 122 CG--KNYKRLRIGIGRPPDTAHIIRHVLGNFSSPERYFLLPIIDNIARSLPLLAKREDVS 179
               + + RL IGIG PP        +L  FSS ER  +   ++    ++  L  +    
Sbjct: 123 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSG 182

Query: 180 FLNHI 184
                
Sbjct: 183 STERF 187


>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 192

 Score = 27.8 bits (62), Expect = 0.66
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 114 GLKSISEKCGKNYKRLRIGIGRPPDTAHIIRHVLG-NFSSP----ERYFLLP-IIDNI 165
           G ++I ++      RLR+ +   P   H+  H     F +P    ER  LL  +I+N+
Sbjct: 102 GQEAILKRYQVTGDRLRVYLHYLPSYYHLHVHFTALGFEAPGSGVERAHLLAQVIENL 159


>d1bsga_ e.3.1.1 (A:) beta-Lactamase, class A {Streptomyces albus G
           [TaxId: 1962]}
          Length = 266

 Score = 26.4 bits (57), Expect = 1.8
 Identities = 22/162 (13%), Positives = 38/162 (23%), Gaps = 21/162 (12%)

Query: 8   GNPGHEYCENRHNIGFMCIDRIHSFHFFPAWKKKFHAEISEGQLDGLRTILIKPQTFMNL 67
           G                 +DR           +                +++        
Sbjct: 121 GPAAVTRFVRSLGDRVTRLDRWEPELNSAEPGRVTDTTSPRAITRTYGRLVLGDALNPRD 180

Query: 68  SGQSLLEVMNFYKLPNLENYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISEKCGKNYK 127
                  ++      +     +       D  TL  KTG G  G N              
Sbjct: 181 RRLLTSWLLANTTSGDRFRAGLP------DDWTLGDKTGAGRYGTNND------------ 222

Query: 128 RLRIGIGRPPDTAHIIRHVLGNFSSPERYFLLPIIDNIARSL 169
               G+  PP  A I+  VL   +  +      ++ + AR L
Sbjct: 223 ---AGVTWPPGRAPIVLTVLTAKTEQDAARDDGLVADAARVL 261


>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus
          sphaericus [TaxId: 1421]}
          Length = 230

 Score = 26.1 bits (57), Expect = 1.8
 Identities = 9/48 (18%), Positives = 15/48 (31%)

Query: 2  FIVAGLGNPGHEYCENRHNIGFMCIDRIHSFHFFPAWKKKFHAEISEG 49
            V GLGN     C+  +  G   +    +     A   +  A+    
Sbjct: 42 VSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAP 89


>d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase
           GlpQ {Escherichia coli [TaxId: 562]}
          Length = 328

 Score = 25.8 bits (55), Expect = 2.5
 Identities = 15/90 (16%), Positives = 27/90 (30%)

Query: 86  NYLVIHDDLDLDFGTLRLKTGGGDAGHNGLKSISEKCGKNYKRLRIGIGRPPDTAHIIRH 145
           + LV+  D  LD  T         A  +G     +      K L+   G   +    ++ 
Sbjct: 44  DNLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQT 103

Query: 146 VLGNFSSPERYFLLPIIDNIARSLPLLAKR 175
             G F   +  F +   +     +  L   
Sbjct: 104 YPGRFPMGKSDFRVHTFEEEIEFVQGLNHS 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.144    0.445 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 756,175
Number of extensions: 35631
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 13
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.4 bits)