HHsearch alignment for GI: 254780226 and conserved domain: PRK09473
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional.
Probab=90.99 E-value=0.18 Score=29.76 Aligned_cols=178 Identities=18% Similarity=0.243 Sum_probs=78.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
T Consensus 44 ilgivGeSGsGKSTl~~~i~gll~~---~~~-~-----sG~I~~~------------G----------~~i~~~------ 86 (330)
T PRK09473 44 TLGIVGESGSGKSQTAFALMGLLAA---NGR-I-----GGSATFN------------G----------REILNL------ 86 (330)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC---CCC-E-----EEEEEEC------------C----------EECCCC------
T ss_conf 9999868987799999999768888---883-3-----5899999------------9----------986658------
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ 163 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~ 163 (367)
T Consensus 87 ----~~~~~~~~r~~~--I~~v--fQd-----p~~sLnP~~~i~~~l~e~l~~~-----~~~~~~~~~--------~~~~ 140 (330)
T PRK09473 87 ----PEKELNKLRAEQ--ISMI--FQD-----PMTSLNPYMRVGEQLMEVLMLH-----KGMSKAEAF--------EESV 140 (330)
T ss_pred ----CHHHHHHHHCCC--EEEE--EEC-----CCHHCCCCCCHHHHHHHHHHHH-----CCCCHHHHH--------HHHH
T ss_conf ----999999863066--7999--607-----5011384104566555789885-----389989999--------9999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCC--HHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999889988758741034431326777621023576410100100343--01110101346787788643698403321
Q gi|254780226|r 164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVS--EHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~--e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
T Consensus 141 ~lL~~-v~l~~~~~~l~~yP~eLSGGq~QRV~IArAL~~~P~lLI~DEPTsaLDv~~q~~Il~ll~~l~~e~g~til~IT 219 (330)
T PRK09473 141 RMLDA-VKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMIT 219 (330)
T ss_pred HHHHH-HHCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 88887-60721788873481533988999999999997099999973875547999999999999999997499479982
Q ss_pred CHHH
Q ss_conf 0024
Q gi|254780226|r 242 AAIE 245 (367)
Q Consensus 242 a~~E 245 (367)
T Consensus 220 HDl~ 223 (330)
T PRK09473 220 HDLG 223 (330)
T ss_pred CCHH
T ss_conf 8899