HHsearch alignment for GI: 254780226 and conserved domain: PRK09473

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional.
Probab=90.99  E-value=0.18  Score=29.76  Aligned_cols=178  Identities=18%  Similarity=0.243  Sum_probs=78.4

Q ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf             48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r    4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK   83 (367)
Q Consensus         4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~   83 (367)
T Consensus        44 ilgivGeSGsGKSTl~~~i~gll~~---~~~-~-----sG~I~~~------------G----------~~i~~~------   86 (330)
T PRK09473         44 TLGIVGESGSGKSQTAFALMGLLAA---NGR-I-----GGSATFN------------G----------REILNL------   86 (330)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCC---CCC-E-----EEEEEEC------------C----------EECCCC------
T ss_conf             9999868987799999999768888---883-3-----5899999------------9----------986658------


Q ss_pred             CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             46632899998730374788501234542113457767321578898888764332224577777875203204677789
Q gi|254780226|r   84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQ  163 (367)
Q Consensus        84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~  163 (367)
T Consensus        87 ----~~~~~~~~r~~~--I~~v--fQd-----p~~sLnP~~~i~~~l~e~l~~~-----~~~~~~~~~--------~~~~  140 (330)
T PRK09473         87 ----PEKELNKLRAEQ--ISMI--FQD-----PMTSLNPYMRVGEQLMEVLMLH-----KGMSKAEAF--------EESV  140 (330)
T ss_pred             ----CHHHHHHHHCCC--EEEE--EEC-----CCHHCCCCCCHHHHHHHHHHHH-----CCCCHHHHH--------HHHH
T ss_conf             ----999999863066--7999--607-----5011384104566555789885-----389989999--------9999


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCC--HHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             9999889988758741034431326777621023576410100100343--01110101346787788643698403321
Q gi|254780226|r  164 SIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVS--EHDCKKGNIYTEAVQRLASQQNAEMIIIS  241 (367)
Q Consensus       164 ~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~--e~~~~~~n~~~e~i~~l~~~~~~~~i~is  241 (367)
T Consensus       141 ~lL~~-v~l~~~~~~l~~yP~eLSGGq~QRV~IArAL~~~P~lLI~DEPTsaLDv~~q~~Il~ll~~l~~e~g~til~IT  219 (330)
T PRK09473        141 RMLDA-VKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMIT  219 (330)
T ss_pred             HHHHH-HHCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             88887-60721788873481533988999999999997099999973875547999999999999999997499479982


Q ss_pred             CHHH
Q ss_conf             0024
Q gi|254780226|r  242 AAIE  245 (367)
Q Consensus       242 a~~E  245 (367)
T Consensus       220 HDl~  223 (330)
T PRK09473        220 HDLG  223 (330)
T ss_pred             CCHH
T ss_conf             8899