HHsearch alignment for GI: 254780226 and conserved domain: TIGR00475
>TIGR00475 selB selenocysteine-specific translation elongation factor; InterPro: IPR004535 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation . This family describes the elongation factor SelB, a close homologue of EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This family should not include an equivalent protein for eukaryotes. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=97.76 E-value=0.00027 Score=48.77 Aligned_cols=80 Identities=33% Similarity=0.490 Sum_probs=54.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCC------CCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCC
Q ss_conf 248675288878889999874048987366686------74488337997685558777642186502335799985122
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPF------CTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAG 76 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypF------tTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaG 76 (367)
T Consensus 1 ~~~at~GHvDHGKT~L~k~LTgi~stsa~~lPeEkqKRG~tID--LGfAy~~l~~~-------------n~~l~~iDvPG 65 (627)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIDSTSADRLPEEKQKRGMTID--LGFAYLPLPDI-------------NKRLGFIDVPG 65 (627)
T ss_pred CEEEEECCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEE--CCCEECCCCCC-------------CCCCEEEECCC
T ss_conf 9687312445047999998506430123127741025766246--04200367777-------------71334785597
Q ss_pred CCCCCCCCCCCHHHHHH----HHHCCCEEEEEECCC
Q ss_conf 35432224663289999----873037478850123
Q gi|254780226|r 77 LVRGASKGEGLGNQFLA----HIREVDAIIHVLRCF 108 (367)
Q Consensus 77 Lv~gA~~G~GlGN~FL~----~ir~aDalihVVdaf 108 (367)
T Consensus 66 -----H------e~fl~n~lAg~~~i~~alLvVda~ 90 (627)
T TIGR00475 66 -----H------EKFLSNALAGIGGIDAALLVVDAD 90 (627)
T ss_pred -----H------HHHHHHHHHHHHHHHHHEEEECCC
T ss_conf -----3------899999866756540100354157