HHsearch alignment for GI: 254780226 and conserved domain: TIGR00691
>TIGR00691 spoT_relA RelA/SpoT family protein; InterPro: IPR004811 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homolog to SpoT and RelA appears responsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process.
Probab=98.56 E-value=1.1e-07 Score=71.67 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=52.8
Q ss_pred CCEEEECCCCCCCCCEECCCCCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCC-CEEEECCCCE
Q ss_conf 964661057875454012786767785110012103483699973688877449968888749653157-6079654988
Q gi|254780226|r 282 DLITYFTVGPKETRAWTIPRGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEG-KEYIVKDGDI 360 (367)
Q Consensus 282 ~li~~~tvg~~e~~aw~i~~GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~G-kdy~v~DGDV 360 (367)
T Consensus 380 ~~i~VFt---P~G~~~~Lp~Gs~~vDfAY~vHtd~G~~~~ga~~ng-------------------~~~~Sl~~~L~nG~v 437 (741)
T TIGR00691 380 EEIYVFT---PKGDVVELPSGSTPVDFAYAVHTDVGHKCTGAKVNG-------------------KIVPSLDKELENGDV 437 (741)
T ss_pred CCCEEEC---CCEEEEEECCCCCHHHHHHHHCHHHCCEEEEEEECC-------------------EEECCCCEEECCCCE
T ss_conf 5424636---830088746899566778763302434367468978-------------------880344501037868
Q ss_pred EEEECC
Q ss_conf 999637
Q gi|254780226|r 361 LHFRFN 366 (367)
Q Consensus 361 i~~~fn 366 (367)
T Consensus 438 VEi~t~ 443 (741)
T TIGR00691 438 VEIITG 443 (741)
T ss_pred EEEEEC
T ss_conf 999857