HHsearch alignment for GI: 254780226 and conserved domain: cd00877
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.79 E-value=0.00091 Score=45.15 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=82.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~~-~f-~~~~~-~Tig~~~~~~~~~----------~~~~---~v~l~iwDtaGqe~--- 61 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTG-EF-EKKYV-ATLGVEVHPLDFH----------TNRG---KIRFNVWDTAGQEK--- 61 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-CC-CCCCC-CCCCEEEEEEEEE----------ECCE---EEEEEEEECCCCHH---
T ss_conf 98999999998889999999839-99-99868-7325567999999----------9997---99999997578715---
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
T Consensus 62 -~~~l~---~~y~~~a~~~ilvyDvt~~~S-------------f------------~~v~-~w~---------------- 95 (166)
T cd00877 62 -FGGLR---DGYYIGGQCAIIMFDVTSRVT-------------Y------------KNVP-NWH---------------- 95 (166)
T ss_pred -HHHHH---HHHHCCCCEEEEECCCCCHHH-------------H------------HHHH-HHH----------------
T ss_conf -66687---887400657998437898889-------------9------------9999-999----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
T Consensus 96 --------~~i~------~----~~-------------~~~piilVgNK~Dl~~~~--~-~~~~~~~~~~~~~~~~EtSA 141 (166)
T cd00877 96 --------RDLV------R----VC-------------GNIPIVLCGNKVDIKDRK--V-KAKQITFHRKKNLQYYEISA 141 (166)
T ss_pred --------HHHH------H----HC-------------CCCCEEEEEECCCCCCCC--C-CHHHHHHHHHCCCEEEEECC
T ss_conf --------9999------8----68-------------999899999862175036--6-79999999978998999845
Q ss_pred HHHHHH
Q ss_conf 024665
Q gi|254780226|r 243 AIEAEI 248 (367)
Q Consensus 243 ~~E~ei 248 (367)
T Consensus 142 k~~~nV 147 (166)
T cd00877 142 KSNYNF 147 (166)
T ss_pred CCCCCH
T ss_conf 899098