HHsearch alignment for GI: 254780226 and conserved domain: cd00877

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.79  E-value=0.00091  Score=45.15  Aligned_cols=147  Identities=16%  Similarity=0.148  Sum_probs=82.3

Q ss_pred             CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf             24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r    3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS   82 (367)
Q Consensus         3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~   82 (367)
T Consensus         1 ~KivlvGd~~VGKTsli~r~~~~-~f-~~~~~-~Tig~~~~~~~~~----------~~~~---~v~l~iwDtaGqe~---   61 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTG-EF-EKKYV-ATLGVEVHPLDFH----------TNRG---KIRFNVWDTAGQEK---   61 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHC-CC-CCCCC-CCCCEEEEEEEEE----------ECCE---EEEEEEEECCCCHH---
T ss_conf             98999999998889999999839-99-99868-7325567999999----------9997---99999997578715---


Q ss_pred             CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r   83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL  162 (367)
Q Consensus        83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~  162 (367)
T Consensus        62 -~~~l~---~~y~~~a~~~ilvyDvt~~~S-------------f------------~~v~-~w~----------------   95 (166)
T cd00877          62 -FGGLR---DGYYIGGQCAIIMFDVTSRVT-------------Y------------KNVP-NWH----------------   95 (166)
T ss_pred             -HHHHH---HHHHCCCCEEEEECCCCCHHH-------------H------------HHHH-HHH----------------
T ss_conf             -66687---887400657998437898889-------------9------------9999-999----------------


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r  163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA  242 (367)
Q Consensus       163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa  242 (367)
T Consensus        96 --------~~i~------~----~~-------------~~~piilVgNK~Dl~~~~--~-~~~~~~~~~~~~~~~~EtSA  141 (166)
T cd00877          96 --------RDLV------R----VC-------------GNIPIVLCGNKVDIKDRK--V-KAKQITFHRKKNLQYYEISA  141 (166)
T ss_pred             --------HHHH------H----HC-------------CCCCEEEEEECCCCCCCC--C-CHHHHHHHHHCCCEEEEECC
T ss_conf             --------9999------8----68-------------999899999862175036--6-79999999978998999845


Q ss_pred             HHHHHH
Q ss_conf             024665
Q gi|254780226|r  243 AIEAEI  248 (367)
Q Consensus       243 ~~E~ei  248 (367)
T Consensus       142 k~~~nV  147 (166)
T cd00877         142 KSNYNF  147 (166)
T ss_pred             CCCCCH
T ss_conf             899098