HHsearch alignment for GI: 254780226 and conserved domain: cd00880

>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.83  E-value=1.2e-19  Score=152.16  Aligned_cols=87  Identities=22%  Similarity=0.237  Sum_probs=77.2

Q ss_pred             EEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCC
Q ss_conf             75288878889999874048987366686744883379976855587776421865023357999851223543222466
Q gi|254780226|r    7 IIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKGEG   86 (367)
Q Consensus         7 lvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G~G   86 (367)
T Consensus         1 ivG~~N~GKStL~N~L~~~~~~~vs~~~gtT~~~~~~~~~~~~~----------------~~i~lvDtpG~~~~~~~~~~   64 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPL----------------GPVVLIDTPGIDEAGGLGRE   64 (163)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCEECCCCCEECCCEEEEEEECCC----------------CEEEEEECCCCCCCCCHHHH
T ss_conf             91979989999999995899610169899865645899995478----------------65999727985222310168


Q ss_pred             CHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             32899998730374788501234
Q gi|254780226|r   87 LGNQFLAHIREVDAIIHVLRCFK  109 (367)
Q Consensus        87 lGN~FL~~ir~aDalihVVdaf~  109 (367)
T Consensus        65 ~~~~~~~~~~~~D~il~viD~~~   87 (163)
T cd00880          65 REELARRVLERADLILFVVDADL   87 (163)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCC
T ss_conf             99999999986898999987899