HHsearch alignment for GI: 254780226 and conserved domain: cd00880
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.83 E-value=1.2e-19 Score=152.16 Aligned_cols=87 Identities=22% Similarity=0.237 Sum_probs=77.2
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 75288878889999874048987366686744883379976855587776421865023357999851223543222466
Q gi|254780226|r 7 IIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKGEG 86 (367)
Q Consensus 7 lvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G~G 86 (367)
T Consensus 1 ivG~~N~GKStL~N~L~~~~~~~vs~~~gtT~~~~~~~~~~~~~----------------~~i~lvDtpG~~~~~~~~~~ 64 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPL----------------GPVVLIDTPGIDEAGGLGRE 64 (163)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCEECCCCCEECCCEEEEEEECCC----------------CEEEEEECCCCCCCCCHHHH
T ss_conf 91979989999999995899610169899865645899995478----------------65999727985222310168
Q ss_pred CHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 32899998730374788501234
Q gi|254780226|r 87 LGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 87 lGN~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 65 ~~~~~~~~~~~~D~il~viD~~~ 87 (163)
T cd00880 65 REELARRVLERADLILFVVDADL 87 (163)
T ss_pred HHHHHHHHHHHCCEEEEEEECCC
T ss_conf 99999999986898999987899