HHsearch alignment for GI: 254780226 and conserved domain: cd01668
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=98.67 E-value=2.3e-08 Score=76.22 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=44.8
Q ss_pred CCCEECCCCCCHHHHHHCCCCHHCCCCEEEEECCHHHHHHCCCHHHHHHCCCEECCCCEEEECCCCEEEEE
Q ss_conf 45401278676778511001210348369997368887744996888874965315760796549889996
Q gi|254780226|r 294 TRAWTIPRGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDILHFR 364 (367)
Q Consensus 294 ~~aw~i~~GstA~d~A~~IHtDi~kgFi~A~v~~~~~~~~~~~~~~~k~~g~~r~~Gkdy~v~DGDVi~~~ 364 (367)
T Consensus 8 G~~~~LP~GaT~lDfAy~iht~lG~~~~~a~v-----------------Ng--~~~~l~~~L~~GD~VeIi 59 (60)
T cd01668 8 GEIIELPAGATVLDFAYAIHTEIGNRCVGAKV-----------------NG--KLVPLSTVLKDGDIVEII 59 (60)
T ss_pred CCEEECCCCCCHHHEHHHHCCCHHHEEEEEEE-----------------CC--EECCCCCCCCCCCEEEEE
T ss_conf 97787899981410433554101422689999-----------------99--998987682899999987