HHsearch alignment for GI: 254780226 and conserved domain: cd01867
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.11 E-value=0.00016 Score=50.31 Aligned_cols=151 Identities=21% Similarity=0.226 Sum_probs=85.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
T Consensus 3 ~~KivlvGd~~vGKTsli~r~~~~~--f~~~~~-~Tig~~~~~k~v~----------~~~~---~i~l~iwDt~G~e~-- 64 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS--FNPSFI-STIGIDFKIRTIE----------LDGK---KIKLQIWDTAGQER-- 64 (167)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCC--CCCCCC-CCCCEEEEEEEEE----------ECCE---EEEEEEEECCCCCC--
T ss_conf 8999999999978899999996099--999868-9864688999999----------9999---99999998999700--
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
T Consensus 65 --~~~~---~~~y~~~a~~~ilvfdit~~~S-------------f~~------------~~-~w~~-------------- 99 (167)
T cd01867 65 --FRTI---TTAYYRGAMGIILVYDITDEKS-------------FEN------------IR-NWMR-------------- 99 (167)
T ss_pred --HHHH---HHHHHHHCCEEEEECCCCCHHH-------------HHH------------HH-HHHH--------------
T ss_conf --1166---7998565058899556898799-------------999------------99-9999--------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
T Consensus 100 ------~----i~~------~---~~-------------~~~~~ilVgNK~Dl~~~-r~v~~~e~~~~a~~~~~~~~e~S 146 (167)
T cd01867 100 ------N----IEE------H---AS-------------EDVERMLVGNKCDMEEK-RVVSKEEGEALADEYGIKFLETS 146 (167)
T ss_pred ------H----HHH------H---CC-------------CCCCEEEECCCCCCHHC-CCCCHHHHHHHHHHHCCEEEEEC
T ss_conf ------9----998------6---69-------------99705764212450230-77999999999998099699982
Q ss_pred CHHHHHH
Q ss_conf 0024665
Q gi|254780226|r 242 AAIEAEI 248 (367)
Q Consensus 242 a~~E~ei 248 (367)
T Consensus 147 Aktg~nI 153 (167)
T cd01867 147 AKANINV 153 (167)
T ss_pred CCCCCCH
T ss_conf 2579078