HHsearch alignment for GI: 254780226 and conserved domain: cd01867

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.11  E-value=0.00016  Score=50.31  Aligned_cols=151  Identities=21%  Similarity=0.226  Sum_probs=85.5

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf             82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r    2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA   81 (367)
Q Consensus         2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA   81 (367)
T Consensus         3 ~~KivlvGd~~vGKTsli~r~~~~~--f~~~~~-~Tig~~~~~k~v~----------~~~~---~i~l~iwDt~G~e~--   64 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDS--FNPSFI-STIGIDFKIRTIE----------LDGK---KIKLQIWDTAGQER--   64 (167)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHCC--CCCCCC-CCCCEEEEEEEEE----------ECCE---EEEEEEEECCCCCC--
T ss_conf             8999999999978899999996099--999868-9864688999999----------9999---99999998999700--


Q ss_pred             CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r   82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL  161 (367)
Q Consensus        82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~  161 (367)
T Consensus        65 --~~~~---~~~y~~~a~~~ilvfdit~~~S-------------f~~------------~~-~w~~--------------   99 (167)
T cd01867          65 --FRTI---TTAYYRGAMGIILVYDITDEKS-------------FEN------------IR-NWMR--------------   99 (167)
T ss_pred             --HHHH---HHHHHHHCCEEEEECCCCCHHH-------------HHH------------HH-HHHH--------------
T ss_conf             --1166---7998565058899556898799-------------999------------99-9999--------------


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r  162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS  241 (367)
Q Consensus       162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is  241 (367)
T Consensus       100 ------~----i~~------~---~~-------------~~~~~ilVgNK~Dl~~~-r~v~~~e~~~~a~~~~~~~~e~S  146 (167)
T cd01867         100 ------N----IEE------H---AS-------------EDVERMLVGNKCDMEEK-RVVSKEEGEALADEYGIKFLETS  146 (167)
T ss_pred             ------H----HHH------H---CC-------------CCCCEEEECCCCCCHHC-CCCCHHHHHHHHHHHCCEEEEEC
T ss_conf             ------9----998------6---69-------------99705764212450230-77999999999998099699982


Q ss_pred             CHHHHHH
Q ss_conf             0024665
Q gi|254780226|r  242 AAIEAEI  248 (367)
Q Consensus       242 a~~E~ei  248 (367)
T Consensus       147 Aktg~nI  153 (167)
T cd01867         147 AKANINV  153 (167)
T ss_pred             CCCCCCH
T ss_conf             2579078