HHsearch alignment for GI: 254780226 and conserved domain: cd01868
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.15 E-value=7.2e-05 Score=52.58 Aligned_cols=149 Identities=23% Similarity=0.255 Sum_probs=84.7
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
T Consensus 3 ~~Kiv~iGd~~VGKTsli~r~~~~-~-f~~~~~-~Tig~~~~~k~i----------~~~~~---~~~l~iwDtaG~e~-- 64 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRN-E-FNLDSK-STIGVEFATRSI----------QIDGK---TIKAQIWDTAGQER-- 64 (165)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCEEEEEEEE----------EECCE---EEEEEEEECCCCHH--
T ss_conf 589999999997899999999729-8-999889-874478789999----------99999---99999998999721--
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
T Consensus 65 --~~~~~~---~~~~~a~~~ilvydit~~~S-------------f------------~~i~-~w---------------- 97 (165)
T cd01868 65 --YRAITS---AYYRGAVGALLVYDITKKQT-------------F------------ENVE-RW---------------- 97 (165)
T ss_pred --HHHHHH---HHHHHCCCEEEEEECCCHHH-------------H------------HHHH-HH----------------
T ss_conf --267899---87332051489862698899-------------9------------9999-99----------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
T Consensus 98 -----------~~~---i~~~----~--------~----~~~~iilVgnK~DL~~~-r~Vs~~e~~~~a~~~~~~~~E~S 146 (165)
T cd01868 98 -----------LKE---LRDH----A--------D----SNIVIMLVGNKSDLRHL-RAVPTEEAKAFAEKNGLSFIETS 146 (165)
T ss_pred -----------HHH---HHHH----C--------C----CCCEEEEECCCCCHHHH-CCCCHHHHHHHHHHCCCEEEEEC
T ss_conf -----------999---9985----5--------5----77359870234786885-78889999999998599799967
Q ss_pred CHHHH
Q ss_conf 00246
Q gi|254780226|r 242 AAIEA 246 (367)
Q Consensus 242 a~~E~ 246 (367)
T Consensus 147 Ak~g~ 151 (165)
T cd01868 147 ALDGT 151 (165)
T ss_pred CCCCC
T ss_conf 88892