HHsearch alignment for GI: 254780226 and conserved domain: cd01878
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.89 E-value=5.1e-22 Score=168.23 Aligned_cols=87 Identities=33% Similarity=0.585 Sum_probs=71.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
T Consensus 43 ~VaivG~PNvGKSTLlN~L~g-~~~~v~~~~~tT~d~~~~~i~~~~~----------------~~i~l~DT~G~i~~~p- 104 (204)
T cd01878 43 TVALVGYTNAGKSTLFNALTG-ADVYAEDQLFATLDPTTRRLRLPDG----------------REVLLTDTVGFIRDLP- 104 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHC-CCCEEECCCCCCCCCEEEEEEECCC----------------CEEEEEECCCCCCCCC-
T ss_conf 799988999989999999948-9963415677645763668995699----------------7799983686446783-
Q ss_pred CCCCHHHH---HHHHHCCCEEEEEECCCC
Q ss_conf 46632899---998730374788501234
Q gi|254780226|r 84 GEGLGNQF---LAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~F---L~~ir~aDalihVVdaf~ 109 (367)
T Consensus 105 -~~lie~~~~tle~i~~AD~il~vvD~s~ 132 (204)
T cd01878 105 -HQLVEAFRSTLEEVAEADLLLHVVDASD 132 (204)
T ss_pred -HHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf -7899999999999973989999997998