HHsearch alignment for GI: 254780226 and conserved domain: cd01878

>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.89  E-value=5.1e-22  Score=168.23  Aligned_cols=87  Identities=33%  Similarity=0.585  Sum_probs=71.1

Q ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf             48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r    4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK   83 (367)
Q Consensus         4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~   83 (367)
T Consensus        43 ~VaivG~PNvGKSTLlN~L~g-~~~~v~~~~~tT~d~~~~~i~~~~~----------------~~i~l~DT~G~i~~~p-  104 (204)
T cd01878          43 TVALVGYTNAGKSTLFNALTG-ADVYAEDQLFATLDPTTRRLRLPDG----------------REVLLTDTVGFIRDLP-  104 (204)
T ss_pred             EEEEECCCCCCHHHHHHHHHC-CCCEEECCCCCCCCCEEEEEEECCC----------------CEEEEEECCCCCCCCC-
T ss_conf             799988999989999999948-9963415677645763668995699----------------7799983686446783-


Q ss_pred             CCCCHHHH---HHHHHCCCEEEEEECCCC
Q ss_conf             46632899---998730374788501234
Q gi|254780226|r   84 GEGLGNQF---LAHIREVDAIIHVLRCFK  109 (367)
Q Consensus        84 G~GlGN~F---L~~ir~aDalihVVdaf~  109 (367)
T Consensus       105 -~~lie~~~~tle~i~~AD~il~vvD~s~  132 (204)
T cd01878         105 -HQLVEAFRSTLEEVAEADLLLHVVDASD  132 (204)
T ss_pred             -HHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_conf             -7899999999999973989999997998