HHsearch alignment for GI: 254780226 and conserved domain: cd01881
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.98 E-value=1.4e-31 Score=232.75 Aligned_cols=176 Identities=53% Similarity=0.840 Sum_probs=138.0
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 75288878889999874048987366686744883379976855587776421865023357999851223543222466
Q gi|254780226|r 7 IIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKGEG 86 (367)
Q Consensus 7 lvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G~G 86 (367)
T Consensus 1 ivG~PNvGKSTL~N~Lt~-~~~~v~~~pgTTr~~~~g~~~~~~----------------~~~i~~~DtpGi~~~~~~~~~ 63 (176)
T cd01881 1 LVGLPNVGKSTLLNALTN-AKPKVANYPFTTLEPNLGVVEVPD----------------GARIQVADIPGLIEGASEGRG 63 (176)
T ss_pred CCCCCCCCHHHHHHHHHC-CCCEEECCCCCEEEEEEEEEEECC----------------CCEEEEEECCCCCCCCHHHHH
T ss_conf 969998889999999968-996030789967612467999479----------------966999957875457337878
Q ss_pred CHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 32899998730374788501234542113457767321578898888764332224577777875203204677789999
Q gi|254780226|r 87 LGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQSII 166 (367)
Q Consensus 87 lGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~~~l 166 (367)
T Consensus 64 ~~~~~l~~~~~~d~il~vvD~~~~~~----~~~~~~~~~~~~i~~el~~~~~~~~------------------------- 114 (176)
T cd01881 64 LGNQFLAHIRRADAILHVVDASEDDD----IGGVDPLEDYEILNAELKLYDLETI------------------------- 114 (176)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCC----CCCCCHHHHHHHHHHHHHHCCHHHH-------------------------
T ss_conf 99999987410889999998987655----4544589999999999997115665-------------------------
Q ss_pred HHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 98899887587410344313267776210235764101001003430111010134678778864369840332100246
Q gi|254780226|r 167 SSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISAAIEA 246 (367)
Q Consensus 167 ~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~~E~ 246 (367)
T Consensus 115 ------------------------------~~~~~~kp~i~v~NK~Dl~~~~~-~~~~~~~~~~~~~~~~ii~iSA~--- 160 (176)
T cd01881 115 ------------------------------LGLLTAKPVIYVLNKIDLDDAEE-LEEELVRELALEEGAEVVPISAK--- 160 (176)
T ss_pred ------------------------------HHHHCCCCEEEEEECEECCCHHH-HHHHHHHHHHHCCCCCEEEEECC---
T ss_conf ------------------------------55432697199996860347003-15999999974689958999777---
Q ss_pred HHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 65528842677887753887422899999999872
Q gi|254780226|r 247 EISQLPEEERALFMEELDISISGLELLIRSGYRLL 281 (367)
Q Consensus 247 ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL 281 (367)
T Consensus 161 -------------------~~~gi~~L~~~i~~~L 176 (176)
T cd01881 161 -------------------TEEGLDELIRAIYELL 176 (176)
T ss_pred -------------------CCCCHHHHHHHHHHHC
T ss_conf -------------------8879999999999659