HHsearch alignment for GI: 254780226 and conserved domain: cd01884
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.14 E-value=0.031 Score=34.83 Aligned_cols=90 Identities=22% Similarity=0.323 Sum_probs=49.0
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCC-C--CCCCCCCCCEEEEECCCHHHHHH----H-HHCCCCEEEEEEEEEEEC
Q ss_conf 24867528887888999987404898736-6--68674488337997685558777----6-421865023357999851
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAA-N--YPFCTIEPNSGEVAVPDPRMHKL----A-EIAESKDLVPTRMSFVDI 74 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~-~--ypFtTi~pn~g~~~v~d~~~~~l----~-~~~~~~~~~p~~i~~iDv 74 (367)
T Consensus 3 ~Ni~iiGHVDhGKTTL~~~l~~~~-~~~~~~~~~~~~~~D~------~~~EreRGiTI~~~~~~~~~~---~~~~~~IDt 72 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVL-AKKGGAKFKKYDEIDK------APEEKARGITINTAHVEYETA---NRHYAHVDC 72 (195)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHH-HHHCCCCCCCCHHCCC------CHHHHCCCCCCCCEEEEEECC---CEEEEECCC
T ss_conf 799999605886989999999988-6634444112001005------466650588614418999608---816996268
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 22354322246632899998730374788501234
Q gi|254780226|r 75 AGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 75 aGLv~gA~~G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 73 PGH~d-------F~~~~i~g~~~~D~aiLVVdA~e 100 (195)
T cd01884 73 PGHAD-------YIKNMITGAAQMDGAILVVSATD 100 (195)
T ss_pred CCHHH-------HHHHHHHHHHHCCEEEEEEECCC
T ss_conf 96077-------88899863511362689985277