HHsearch alignment for GI: 254780226 and conserved domain: cd01887
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.29 E-value=9.4e-11 Score=92.26 Aligned_cols=84 Identities=21% Similarity=0.290 Sum_probs=52.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
T Consensus 2 ~VaivG~~n~GKSTL~n~L~~~-~~~~~~~~g~T~~--i~~~~~~~~-------~~~~-----~~i~~iDTPG-----h~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKT-NVAAGEAGGITQH--IGAFEVPAE-------VLKI-----PGITFIDTPG-----HE 61 (168)
T ss_pred EEEEEECCCCCHHHHHHHHHCC-CCCEEECCCCEEE--ECEEEEEEE-------ECCC-----CEEEEEECCC-----CH
T ss_conf 8999948998598999998586-7504516981687--153999988-------2588-----7189998998-----16
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 46632899998730374788501234
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 62 ~--f~~~~~~~~~~aD~~ilvvda~~ 85 (168)
T cd01887 62 A--FTNMRARGASLTDIAILVVAADD 85 (168)
T ss_pred H--HHHHHHHHHHHCCEEEEEEECCC
T ss_conf 7--79999999862688999986466