HHsearch alignment for GI: 254780226 and conserved domain: cd01892

>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.36  E-value=1.5e-05  Score=57.13  Aligned_cols=147  Identities=16%  Similarity=0.227  Sum_probs=86.7

Q ss_pred             CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE--EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf             24867528887888999987404898736668674488337--9976855587776421865023357999851223543
Q gi|254780226|r    3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG--EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG   80 (367)
Q Consensus         3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g--~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g   80 (367)
T Consensus         5 fk~~VlG~~~VGKTsLi~rf~~~-~f~~~~y~-~Ti~~~~~~k~v~v~------------g~---~~~L~i~Dt~g~e--   65 (169)
T cd01892           5 FLCFVLGAKGSGKSALLRAFLGR-SFSLNAYS-PTIKPRYAVNTVEVY------------GQ---EKYLILREVGEDE--   65 (169)
T ss_pred             EEEEEECCCCCCHHHHHHHHHCC-CCCCCCCC-CCCCCEEEEEEEEEC------------CE---EEEEEEEECCCCH--
T ss_conf             99999999998899999999649-99866656-754661899999989------------99---9999998556532--


Q ss_pred             CCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             22246632899998730374788501234542113457767321578898888764332224577777875203204677
Q gi|254780226|r   81 ASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIV  160 (367)
Q Consensus        81 A~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~  160 (367)
T Consensus        66 --~~~~l~~~---~~~~ad~~ilVyDit~~~-------------SF~~i-------------------~-----------   97 (169)
T cd01892          66 --VAILLNDA---ELAACDVACLVYDSSDPK-------------SFSYC-------------------A-----------   97 (169)
T ss_pred             --HHHHHHHH---HHCCCCEEEEEEECCCHH-------------HHHHH-------------------H-----------
T ss_conf             --35566588---754698899999799878-------------99999-------------------9-----------


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCC-CC
Q ss_conf             78999998899887587410344313267776210235764101001003430111010134678778864369840-33
Q gi|254780226|r  161 LLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEM-II  239 (367)
Q Consensus       161 ~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~-i~  239 (367)
T Consensus        98 ---~-------~~~~------~---------------~~~~~iP~vlVgNK~DL~~~r-qV~~~e~~~~a~~~~~~~~~e  145 (169)
T cd01892          98 ---E-------VYKK------Y---------------FMLGEIPCLFVAAKADLDEQQ-QRYEVQPDEFCRKLGLPPPLH  145 (169)
T ss_pred             ---H-------HHHH------H---------------HCCCCCCEEEEEECCCCCCCC-CCCHHHHHHHHHHCCCCCCEE
T ss_conf             ---9-------9997------0---------------056898189998865542037-546776999999839996669


Q ss_pred             CCCHHHHHH
Q ss_conf             210024665
Q gi|254780226|r  240 ISAAIEAEI  248 (367)
Q Consensus       240 isa~~E~ei  248 (367)
T Consensus       146 ~SAktg~nv  154 (169)
T cd01892         146 FSSKLGDSS  154 (169)
T ss_pred             EEEECCCCH
T ss_conf             983279898