HHsearch alignment for GI: 254780226 and conserved domain: cd01892
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.36 E-value=1.5e-05 Score=57.13 Aligned_cols=147 Identities=16% Similarity=0.227 Sum_probs=86.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE--EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 24867528887888999987404898736668674488337--9976855587776421865023357999851223543
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG--EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRG 80 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g--~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~g 80 (367)
T Consensus 5 fk~~VlG~~~VGKTsLi~rf~~~-~f~~~~y~-~Ti~~~~~~k~v~v~------------g~---~~~L~i~Dt~g~e-- 65 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGR-SFSLNAYS-PTIKPRYAVNTVEVY------------GQ---EKYLILREVGEDE-- 65 (169)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC-CCCCCCCC-CCCCCEEEEEEEEEC------------CE---EEEEEEEECCCCH--
T ss_conf 99999999998899999999649-99866656-754661899999989------------99---9999998556532--
Q ss_pred CCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 22246632899998730374788501234542113457767321578898888764332224577777875203204677
Q gi|254780226|r 81 ASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIV 160 (367)
Q Consensus 81 A~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~ 160 (367)
T Consensus 66 --~~~~l~~~---~~~~ad~~ilVyDit~~~-------------SF~~i-------------------~----------- 97 (169)
T cd01892 66 --VAILLNDA---ELAACDVACLVYDSSDPK-------------SFSYC-------------------A----------- 97 (169)
T ss_pred --HHHHHHHH---HHCCCCEEEEEEECCCHH-------------HHHHH-------------------H-----------
T ss_conf --35566588---754698899999799878-------------99999-------------------9-----------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCC-CC
Q ss_conf 78999998899887587410344313267776210235764101001003430111010134678778864369840-33
Q gi|254780226|r 161 LLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEM-II 239 (367)
Q Consensus 161 ~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~-i~ 239 (367)
T Consensus 98 ---~-------~~~~------~---------------~~~~~iP~vlVgNK~DL~~~r-qV~~~e~~~~a~~~~~~~~~e 145 (169)
T cd01892 98 ---E-------VYKK------Y---------------FMLGEIPCLFVAAKADLDEQQ-QRYEVQPDEFCRKLGLPPPLH 145 (169)
T ss_pred ---H-------HHHH------H---------------HCCCCCCEEEEEECCCCCCCC-CCCHHHHHHHHHHCCCCCCEE
T ss_conf ---9-------9997------0---------------056898189998865542037-546776999999839996669
Q ss_pred CCCHHHHHH
Q ss_conf 210024665
Q gi|254780226|r 240 ISAAIEAEI 248 (367)
Q Consensus 240 isa~~E~ei 248 (367)
T Consensus 146 ~SAktg~nv 154 (169)
T cd01892 146 FSSKLGDSS 154 (169)
T ss_pred EEEECCCCH
T ss_conf 983279898