HHsearch alignment for GI: 254780226 and conserved domain: cd01896
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=100.00 E-value=1.6e-39 Score=286.17 Aligned_cols=224 Identities=27% Similarity=0.355 Sum_probs=154.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
T Consensus 2 ~V~LVG~PN~GKSTLln~LT~-a~~~v~~ypfTT~~pi~g~~~~~~-----------------~~iqlvDtPGli~~a~~ 63 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTN-TKSEVAAYEFTTLTCVPGVLEYKG-----------------AKIQLLDLPGIIEGAAD 63 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCEEEEEEECC-----------------EEEEEEECCCCCCCCCC
T ss_conf 599999999999999999978-995436989787574777999899-----------------89999967300246333
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCC------
Q ss_conf 46632899998730374788501234542113457767321578898888764332224577777--8752032------
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKN--KKYRNHK------ 155 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~--~k~~~~~------ 155 (367)
T Consensus 64 g~g~g~~~l~~~r~aD~il~VvD~~------------~~~~~~~~i~~eLe~~gi~-l~~~~~~v~i~~~~~~gi~i~~~ 130 (233)
T cd01896 64 GKGRGRQVIAVARTADLILMVLDAT------------KPEGHREILERELEGVGIR-LNKRPPNITIKKKKKGGINITST 130 (233)
T ss_pred CCCHHHHHHHHHHHCCEEEEEEECC------------CCHHHHHHHHHHHHHHCCC-CCCCCCCCEEEEECCCCEEEECC
T ss_conf 3206899999987589999998479------------8266789999999860511-03578762577713586786045
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 04677789999988998875874103443132677762102357641010010034301110101346787788643698
Q gi|254780226|r 156 SEEIVLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNA 235 (367)
Q Consensus 156 ~~~~~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~ 235 (367)
T Consensus 131 ~~~~~~~~~~v~~il~e~~i~~a~v~i~~~~t~dd~~d~i~~n~-~y~P~i~V~NKiDl~~~------ee~~~~~--~~~ 201 (233)
T cd01896 131 VPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNR-VYIPCLYVYNKIDLISI------EELDLLA--RQP 201 (233)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCC-CCCCEEEEEECCCCCCH------HHHHHHH--CCC
T ss_conf 66666888999999998276764378605788889899873576-76737999974036998------9999864--679
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECC
Q ss_conf 403321002466552884267788775388742289999999987296466105
Q gi|254780226|r 236 EMIIISAAIEAEISQLPEEERALFMEELDISISGLELLIRSGYRLLDLITYFTV 289 (367)
Q Consensus 236 ~~i~isa~~E~ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL~li~~~tv 289 (367)
T Consensus 202 ~~i~ISA~----------------------~g~gld~L~~~I~~~L~liRvytK 233 (233)
T cd01896 202 NSVVISAE----------------------KGLNLDELKERIWDKLGLIRVYTK 233 (233)
T ss_pred CEEEEECC----------------------CCCCHHHHHHHHHHHHCCEEEECC
T ss_conf 85999888----------------------898989999999998396899559