HHsearch alignment for GI: 254780226 and conserved domain: cd01897
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.87 E-value=3.3e-21 Score=162.74 Aligned_cols=164 Identities=23% Similarity=0.328 Sum_probs=110.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
T Consensus 2 ~VaivG~pNvGKStL~N~L~g-~~~~v~~~p~TTr~~~~~~~~~~~-----------------~~~~liDTpGi~~~~~~ 63 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTR-AKPEVAPYPFTTKSLFVGHFDYKY-----------------LRWQVIDTPGLLDRPLE 63 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHC-CCCEECCCCCCCCCCEEEEEEECC-----------------CEEEEECCCCCCCCCHH
T ss_conf 799988999889999999958-986023758723574368999837-----------------27687248865567478
Q ss_pred CCC-CHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 466-32899998730-3747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 84 GEG-LGNQFLAHIRE-VDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 84 G~G-lGN~FL~~ir~-aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
T Consensus 64 ~~~~ie~~~~~~l~~~~d~il~viD~~~~~~--------~~~~~------------------~----------------- 100 (168)
T cd01897 64 ERNTIEMQAITALAHLRAAVLFLFDPSETCG--------YSLEE------------------Q----------------- 100 (168)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCCCC--------CCHHH------------------H-----------------
T ss_conf 8889999999999835776899996887678--------48999------------------9-----------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
T Consensus 101 -~~l~~~-------------------------i~~--~~~~~p~i~v~NK~Dl~~~~---~~~~~~~~~~~~~~~vi~IS 149 (168)
T cd01897 101 -LSLFEE-------------------------IKP--LFKNKPVIVVLNKIDLLTFE---DLSEIEEEEELEGEEVLKIS 149 (168)
T ss_pred -HHHHHH-------------------------HHH--HHCCCCEEEEEECCCCCCCC---CHHHHHHHHHCCCCCEEEEE
T ss_conf -999998-------------------------776--52588879999475345810---07999999970899889998
Q ss_pred CHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 0024665528842677887753887422899999999872
Q gi|254780226|r 242 AAIEAEISQLPEEERALFMEELDISISGLELLIRSGYRLL 281 (367)
Q Consensus 242 a~~E~ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL 281 (367)
T Consensus 150 A~----------------------~g~Gi~~L~~~i~ell 167 (168)
T cd01897 150 TL----------------------TEEGVDEVKNKACELL 167 (168)
T ss_pred CC----------------------CCCCHHHHHHHHHHHC
T ss_conf 15----------------------8969999999999963