HHsearch alignment for GI: 254780226 and conserved domain: cd01900

>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=100.00  E-value=0  Score=637.41  Aligned_cols=274  Identities=58%  Similarity=0.914  Sum_probs=265.5

Q ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCC
Q ss_conf             86752888788899998740489873666867448833799768555877764218650233579998512235432224
Q gi|254780226|r    5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKG   84 (367)
Q Consensus         5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G   84 (367)
T Consensus         1 ~GivGlpnvGKstlFnalT~-~~~~~~nypf~ti~pn~g~v~VpD~Rl~~L~~~~~p~k~i~a~vefvDIaGLvkgAs~G   79 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTK-AGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG   79 (274)
T ss_pred             CCEECCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCC
T ss_conf             95647899988999999977-99874589977726805899677565889987317765123578998546556775236


Q ss_pred             CCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             66328999987303747885012345421134577673215788988887643322245777778752032046777899
Q gi|254780226|r   85 EGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQS  164 (367)
Q Consensus        85 ~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~~  164 (367)
T Consensus        80 eGLGN~FL~~Ir~vDai~hVVR~F~d~~I~Hv~g~vDP~rDieiI~~ELiLaDLe~vEKrlekl~K~~k~~dk~~~~e~~  159 (274)
T cd01900          80 EGLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSGDKEAKAELE  159 (274)
T ss_pred             CCCCHHHHHHHHHCCEEEEEHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             76508999998734634653211157730178999797999999999999999999999999988775047777899999


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf             99988998875874103443132677762102357641010010034301110101346787788643698403321002
Q gi|254780226|r  165 IISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISAAI  244 (367)
Q Consensus       165 ~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~~  244 (367)
T Consensus       160 ~L~ki~~~Le~g~~~r~~--~~~~ee~~~i~~l~LLT~KPviyV~Nv~E~d~~~~~~~~~~~~~~~~~~~~~~I~isaki  237 (274)
T cd01900         160 LLEKIKEHLEEGKPARSL--ELTEEEIEILNSLQLLTAKPVLYVANVSEDDLANGNNKVLKVREIAAKEGAEVIPISAKI  237 (274)
T ss_pred             HHHHHHHHHHCCCCHHCC--CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCHHHHHHHHHHHCCCCCEEEEEHHH
T ss_conf             999999998679810205--689889999986316533875999978867743662889999999766899099978999


Q ss_pred             HHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf             4665528842677887753887422899999999872
Q gi|254780226|r  245 EAEISQLPEEERALFMEELDISISGLELLIRSGYRLL  281 (367)
Q Consensus       245 E~ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL  281 (367)
T Consensus       238 E~Ei~~L~~eE~~efL~~lGl~esgL~~lIr~~Y~lL  274 (274)
T cd01900         238 EAELAELDEEEAAEFLEELGLEESGLDRLIRAGYELL  274 (274)
T ss_pred             HHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf             9999679999999999982998313889999998549