HHsearch alignment for GI: 254780226 and conserved domain: cd01900
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=100.00 E-value=0 Score=637.41 Aligned_cols=274 Identities=58% Similarity=0.914 Sum_probs=265.5
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 86752888788899998740489873666867448833799768555877764218650233579998512235432224
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASKG 84 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~G 84 (367)
T Consensus 1 ~GivGlpnvGKstlFnalT~-~~~~~~nypf~ti~pn~g~v~VpD~Rl~~L~~~~~p~k~i~a~vefvDIaGLvkgAs~G 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTK-AGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CCEECCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCC
T ss_conf 95647899988999999977-99874589977726805899677565889987317765123578998546556775236
Q ss_pred CCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 66328999987303747885012345421134577673215788988887643322245777778752032046777899
Q gi|254780226|r 85 EGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQS 164 (367)
Q Consensus 85 ~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~~~ 164 (367)
T Consensus 80 eGLGN~FL~~Ir~vDai~hVVR~F~d~~I~Hv~g~vDP~rDieiI~~ELiLaDLe~vEKrlekl~K~~k~~dk~~~~e~~ 159 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSGDKEAKAELE 159 (274)
T ss_pred CCCCHHHHHHHHHCCEEEEEHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 76508999998734634653211157730178999797999999999999999999999999988775047777899999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 99988998875874103443132677762102357641010010034301110101346787788643698403321002
Q gi|254780226|r 165 IISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISAAI 244 (367)
Q Consensus 165 ~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa~~ 244 (367)
T Consensus 160 ~L~ki~~~Le~g~~~r~~--~~~~ee~~~i~~l~LLT~KPviyV~Nv~E~d~~~~~~~~~~~~~~~~~~~~~~I~isaki 237 (274)
T cd01900 160 LLEKIKEHLEEGKPARSL--ELTEEEIEILNSLQLLTAKPVLYVANVSEDDLANGNNKVLKVREIAAKEGAEVIPISAKI 237 (274)
T ss_pred HHHHHHHHHHCCCCHHCC--CCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCHHHHHHHHHHHCCCCCEEEEEHHH
T ss_conf 999999998679810205--689889999986316533875999978867743662889999999766899099978999
Q ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 4665528842677887753887422899999999872
Q gi|254780226|r 245 EAEISQLPEEERALFMEELDISISGLELLIRSGYRLL 281 (367)
Q Consensus 245 E~ei~~l~~ee~~e~l~~~~l~~tgl~~li~~~~~lL 281 (367)
T Consensus 238 E~Ei~~L~~eE~~efL~~lGl~esgL~~lIr~~Y~lL 274 (274)
T cd01900 238 EAELAELDEEEAAEFLEELGLEESGLDRLIRAGYELL 274 (274)
T ss_pred HHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 9999679999999999982998313889999998549