HHsearch alignment for GI: 254780226 and conserved domain: cd03220
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.81 E-value=0.063 Score=32.74 Aligned_cols=32 Identities=44% Similarity=0.685 Sum_probs=25.4
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 48675288878889999874048987366686744883379976
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAV 47 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v 47 (367)
T Consensus 50 ivgilG~NGaGKSTLl~~i~Gl~~------------p~~G~I~i 81 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGIYP------------PDSGTVTV 81 (224)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC------------CCCCEEEE
T ss_conf 999997999819999999975877------------78776999