HHsearch alignment for GI: 254780226 and conserved domain: cd03221
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.42 E-value=0.022 Score=35.80 Aligned_cols=34 Identities=32% Similarity=0.600 Sum_probs=27.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
T Consensus 28 ~~~l~G~NGsGKTTl~~~l~G~------------~~~~~G~i~~~~ 61 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGE------------LEPDEGIVTWGS 61 (144)
T ss_pred EEEEECCCCCCHHHHHHHHHCC------------CCCCCEEEEECC
T ss_conf 9999989998499999998489------------889850999999