HHsearch alignment for GI: 254780226 and conserved domain: cd03236
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.08 E-value=0.05 Score=33.43 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.0
Q ss_pred EEEEECCCCCHHHHHHHHHCCC
Q ss_conf 8675288878889999874048
Q gi|254780226|r 5 CGIIGLPNVGKSTLFNALTRTA 26 (367)
Q Consensus 5 iGlvG~pn~GKST~f~alT~~~ 26 (367)
T Consensus 29 ~gLiGpNGaGKSTLlk~i~Gll 50 (255)
T cd03236 29 LGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999970999999996798