HHsearch alignment for GI: 254780226 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.37 E-value=0.043 Score=33.86 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=27.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
T Consensus 42 ~vaIvG~sGsGKSTL~~ll~gl~------------~p~~G~I~idg 75 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFY------------QPQGGQVLLDG 75 (226)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEECC
T ss_conf 99999999984999999996454------------67887899999