HHsearch alignment for GI: 254780226 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.73 E-value=0.033 Score=34.69 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=27.1
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 4867528887888999987404898736668674488337997685
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPD 49 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d 49 (367)
T Consensus 30 ~i~IvG~sGsGKSTLl~ll~gl~------------~p~~G~I~i~g 63 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFY------------DVDSGRILIDG 63 (234)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC------------CCCCCEEEECC
T ss_conf 99999899982999999996676------------67886899999