HHsearch alignment for GI: 254780226 and conserved domain: cd04106
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.93 E-value=0.00017 Score=50.13 Aligned_cols=151 Identities=20% Similarity=0.194 Sum_probs=86.3
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
T Consensus 1 iKivvlGd~~VGKTsLi~r~~~~~--f~~~y~-~Tig~~~~~k~i~----------~~~~-~~~v~l~iwDtaG~e~--- 63 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGI--FTKDYK-KTIGVDFLEKQIF----------LRQS-DEDVRLMLWDTAGQEE--- 63 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC--CCCCCC-CCCCCEEEEEEEE----------ECCC-CEEEEEEEEECCCCCC---
T ss_conf 989999999988999999998496--898768-8556257887899----------8679-9799999997899701---
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
T Consensus 64 -~~~l~---~~~~~~a~~~ilvydvt~~~S-------------f------------~~l~-~w----------------- 96 (162)
T cd04106 64 -FDAIT---KAYYRGAQACILVFSTTDRES-------------F------------EAIE-SW----------------- 96 (162)
T ss_pred -CCCCH---HHHHHHHCCEEEEEECCCHHH-------------H------------HHHH-HH-----------------
T ss_conf -34152---456123031268840698899-------------9------------9999-99-----------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
T Consensus 97 -------~~~~~~------~-----------~~------~~piilVgNK~DL~~-~r~V~~~e~~~~a~~~~~~~~E~SA 145 (162)
T cd04106 97 -------KEKVEA------E-----------CG------DIPMVLVQTKIDLLD-QAVITNEEAEALAKRLQLPLFRTSV 145 (162)
T ss_pred -------HHHHHH------H-----------CC------CCCEEEEECCHHHHH-CCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf -------999997------6-----------69------962999840544410-1778999999999986987999868
Q ss_pred HHHHHH
Q ss_conf 024665
Q gi|254780226|r 243 AIEAEI 248 (367)
Q Consensus 243 ~~E~ei 248 (367)
T Consensus 146 k~~~nV 151 (162)
T cd04106 146 KDDFNV 151 (162)
T ss_pred CCCCCH
T ss_conf 888298