HHsearch alignment for GI: 254780226 and conserved domain: cd04110

>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.07  E-value=0.00015  Score=50.43  Aligned_cols=148  Identities=21%  Similarity=0.248  Sum_probs=87.4

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE--EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCC
Q ss_conf             824867528887888999987404898736668674488337--997685558777642186502335799985122354
Q gi|254780226|r    2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG--EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVR   79 (367)
Q Consensus         2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g--~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~   79 (367)
T Consensus         6 ~~KIvlvGd~~VGKTSli~r~~~~-~-F~~~~~-~Tig~d~~~k~v~i------------~~~---~v~l~iwDtaGqe-   66 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADN-T-FSGSYI-TTIGVDFKIRTVEI------------NGE---RVKLQIWDTAGQE-   66 (199)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHCC-C-CCCCCC-CCCCEEEEEEEEEE------------CCE---EEEEEEEECCCCC-
T ss_conf             779999997998889999999509-9-999868-97555878999999------------999---9999999899981-


Q ss_pred             CCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             32224663289999873037478850123454211345776732157889888876433222457777787520320467
Q gi|254780226|r   80 GASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEI  159 (367)
Q Consensus        80 gA~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~  159 (367)
T Consensus        67 ---~~~~l~~~~---~~~a~~~ilvyDit~~~S-------------f------------~~l~-~w~-------------  101 (199)
T cd04110          67 ---RFRTITSTY---YRGTHGVIVVYDVTNGES-------------F------------VNVK-RWL-------------  101 (199)
T ss_pred             ---CCCCCHHHH---HHCCCCCEEEEECCCHHH-------------H------------HHHH-HHH-------------
T ss_conf             ---235352666---424654238971798899-------------9------------9999-999-------------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf             77899999889988758741034431326777621023576410100100343011101013467877886436984033
Q gi|254780226|r  160 VLLQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMII  239 (367)
Q Consensus       160 ~~~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~  239 (367)
T Consensus       102 -----------~~i~~---------------------~--~~~~~~ilVGNK~Dl~~~r-~v~~~e~~~~a~~~~~~f~E  146 (199)
T cd04110         102 -----------QEIEQ---------------------N--CDDVCKVLVGNKNDDPERK-VVETEDAYKFAGQMGISLFE  146 (199)
T ss_pred             -----------HHHHH---------------------H--CCCCCEEEEEECCCHHHHC-CCCHHHHHHHHHHCCCEEEE
T ss_conf             -----------99997---------------------5--9987579998855447546-99999999999986997999


Q ss_pred             CCCHHHHHH
Q ss_conf             210024665
Q gi|254780226|r  240 ISAAIEAEI  248 (367)
Q Consensus       240 isa~~E~ei  248 (367)
T Consensus       147 ~SAktg~nV  155 (199)
T cd04110         147 TSAKENINV  155 (199)
T ss_pred             EECCCCCCH
T ss_conf             868999298