>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

Probab=98.21 E-value=6.6e-05 Score=52.85 Aligned_cols=149 Identities=18% Similarity=0.176 Sum_probs=85.0 Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432 Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367) Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367) T Consensus 7 ~~KivllGd~~VGKTsli~r~~~~-~f-~~~~-----~~Tig~d~~~-----k~i-~~~~~~---v~l~iwDtaG~e~-- 68 (169) T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQG-LF-PPGQ-----GATIGVDFMI-----KTV-EIKGEK---IKLQIWDTAGQER-- 68 (169) T ss_pred EEEEEEECCCCCCHHHHHHHHHHC-CC-CCCC-----CCCCCEEEEE-----EEE-EECCEE---EEEEEEECCCCCC-- T ss_conf 989999998997999999999859-89-9986-----7741247899-----999-999999---9999998999844-- Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777 Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367) Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367) T Consensus 69 --~~~l~---~~~~~~a~~~ilvydvt~~~S-------------f------------~~l~-~w~--------------- 102 (169) T cd04114 69 --FRSIT---QSYYRSANALILTYDITCEES-------------F------------RCLP-EWL--------------- 102 (169) T ss_pred --CCCCH---HHHHHCCCEEEEEECCCCHHH-------------H------------HHHH-HHH--------------- T ss_conf --45155---777423664599814898889-------------9------------9999-999--------------- Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321 Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367) Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367) T Consensus 103 ---------~~i~~----------~~--------~----~~~~~ilVGNK~DL~~~-r~v~~~~~~~~a~~~~~~~~E~S 150 (169) T cd04114 103 ---------REIEQ----------YA--------N----NKVITILVGNKIDLAER-REVSQQRAEEFSDAQDMYYLETS 150 (169) T ss_pred ---------HHHHH----------HC--------C----CCCEEEEECCCCCHHHC-CCCCHHHHHHHHHHCCCEEEEEC T ss_conf ---------99998----------68--------9----88638973113434541-78899999999998899999986 Q ss_pred CHHHH Q ss_conf 00246 Q gi|254780226|r 242 AAIEA 246 (367) Q Consensus 242 a~~E~ 246 (367) T Consensus 151 Aktg~ 155 (169) T cd04114 151 AKESD 155 (169) T ss_pred CCCCC T ss_conf 89880

HHsearch alignment for GI: 254780226 and conserved domain: cd04114