HHsearch alignment for GI: 254780226 and conserved domain: cd04117

>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.11  E-value=9.1e-05  Score=51.90  Aligned_cols=150  Identities=18%  Similarity=0.244  Sum_probs=87.1

Q ss_pred             CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf             24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r    3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS   82 (367)
Q Consensus         3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~   82 (367)
T Consensus         1 ~KIvllGd~~VGKTsli~r~~~~-~-f~~~~~-~Tig~~~~~k~v~----------~~~---~~i~l~iwDtaGqe----   60 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDN-E-FHSSHI-STIGVDFKMKTIE----------VDG---IKVRIQIWDTAGQE----   60 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC-C-CCCCCC-CCCEEEEEEEEEE----------ECC---EEEEEEEEECCCCC----
T ss_conf             98999994998589999999429-9-899878-8720898899999----------999---99999999799960----


Q ss_pred             CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r   83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL  162 (367)
Q Consensus        83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~  162 (367)
T Consensus        61 ~~~~~~~---~y~r~a~~~ilvyDvt~~~S-------------f------------~~l~-~w~----------------   95 (161)
T cd04117          61 RYQTITK---QYYRRAQGIFLVYDISSERS-------------Y------------QHIM-KWV----------------   95 (161)
T ss_pred             CCCCCHH---HHHHHHCEEEEECCCCCHHH-------------H------------HHHH-HHH----------------
T ss_conf             2363558---88764168899614898899-------------9------------9999-999----------------


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r  163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA  242 (367)
Q Consensus       163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa  242 (367)
T Consensus        96 --------~~i~~----------~~~------------~~~~~ilVgNK~Dl~~~r-~v~~~~~~~~a~~~~~~~~etSA  144 (161)
T cd04117          96 --------SDVDE----------YAP------------EGVQKILIGNKADEEQKR-QVGDEQGNKLAKEYGMDFFETSA  144 (161)
T ss_pred             --------HHHHH----------HCC------------CCCEEEEEEECCCHHHCC-CCCHHHHHHHHHHCCCEEEEECC
T ss_conf             --------99998----------789------------986499987327878627-79999999999986997999677


Q ss_pred             HHHHHH
Q ss_conf             024665
Q gi|254780226|r  243 AIEAEI  248 (367)
Q Consensus       243 ~~E~ei  248 (367)
T Consensus       145 k~~~nV  150 (161)
T cd04117         145 CTNSNI  150 (161)
T ss_pred             CCCCCH
T ss_conf             898298