HHsearch alignment for GI: 254780226 and conserved domain: cd04119
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.29 E-value=2.7e-05 Score=55.44 Aligned_cols=152 Identities=15% Similarity=0.133 Sum_probs=85.6
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337997685558777642186502335799985122354322
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
T Consensus 1 lKivvvG~~~vGKTSLi~r~~~~-~-f~~~y~-pTig~~~~~k~~~----------~~~---~~~~l~iwDt~G~~---- 60 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEG-R-FVSKYL-PTIGIDYGVKKVS----------VRN---KEVRVNFFDLSGHP---- 60 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCEEEEEEEEE----------ECC---EEEEEEEEECCCCH----
T ss_conf 98999995995689999999639-9-999858-9765577799999----------999---99999999899976----
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL 162 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~ 162 (367)
T Consensus 61 ~~~~~~~~---~~~~ad~~ilvydit~~~S----------f~-------~l~~w~~~~~--------------------- 99 (168)
T cd04119 61 EYLEVRNE---FYKDTQGVLLVYDVTDRQS----------FE-------ALDSWLKEMK--------------------- 99 (168)
T ss_pred HHHHHHHH---HHHHCCEEEEEECCCCHHH----------HH-------HHHHHHHHHH---------------------
T ss_conf 47899999---9874778899950897444----------89-------9999999999---------------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r 163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA 242 (367)
Q Consensus 163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa 242 (367)
T Consensus 100 --------~~~---------------------~~~~~~~~~~~ilvgnK~Dl~~~r-~v~~~~~~~~a~~~~~~~~E~Sa 149 (168)
T cd04119 100 --------QEG---------------------GPHGNMENIVVVVCANKIDLTKHR-AVSEDEGRLWAESKGFKYFETSA 149 (168)
T ss_pred --------HHH---------------------CCCCCCCCCEEEEEEEECCCCCCC-CCCHHHHHHHHHHCCCEEEEECC
T ss_conf --------982---------------------453456686299985403444257-88999999999986998999885
Q ss_pred HHH
Q ss_conf 024
Q gi|254780226|r 243 AIE 245 (367)
Q Consensus 243 ~~E 245 (367)
T Consensus 150 k~g 152 (168)
T cd04119 150 CTG 152 (168)
T ss_pred CCC
T ss_conf 779