HHsearch alignment for GI: 254780226 and conserved domain: cd04132

>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.77  E-value=0.013  Score=37.48  Aligned_cols=83  Identities=18%  Similarity=0.140  Sum_probs=50.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf             48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r    4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK   83 (367)
Q Consensus         4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~   83 (367)
T Consensus         2 KivlvGd~~VGKTsli~r~~~~~--F~~~~~-pT----i~~~~~~~~------~~~~~---~~v~l~iwDtaG~e----~   61 (187)
T cd04132           2 KIVVVGDGGCGKTCLLIVYSQGK--FPEEYV-PT----VFENYVTNI------QGPNG---KIIELALWDTAGQE----E   61 (187)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC--CCCCCC-CC----EEEEEEEEE------EEECC---EEEEEEEEECCCCC----C
T ss_conf             89999949976999999996398--999758-96----647999999------95499---89999999699971----1


Q ss_pred             CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             46632899998730374788501234
Q gi|254780226|r   84 GEGLGNQFLAHIREVDAIIHVLRCFK  109 (367)
Q Consensus        84 G~GlGN~FL~~ir~aDalihVVdaf~  109 (367)
T Consensus        62 ~~~l~~~~---~~~a~~~ilvydit~   84 (187)
T cd04132          62 YDRLRPLS---YPDVDVLLICYAVDN   84 (187)
T ss_pred             CCCCHHHH---HHHCCEEEEEECCCC
T ss_conf             05343445---300348889503687