HHsearch alignment for GI: 254780226 and conserved domain: cd04132
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.77 E-value=0.013 Score=37.48 Aligned_cols=83 Identities=18% Similarity=0.140 Sum_probs=50.5
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~--F~~~~~-pT----i~~~~~~~~------~~~~~---~~v~l~iwDtaG~e----~ 61 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGK--FPEEYV-PT----VFENYVTNI------QGPNG---KIIELALWDTAGQE----E 61 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHHCC--CCCCCC-CC----EEEEEEEEE------EEECC---EEEEEEEEECCCCC----C
T ss_conf 89999949976999999996398--999758-96----647999999------95499---89999999699971----1
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 46632899998730374788501234
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 62 ~~~l~~~~---~~~a~~~ilvydit~ 84 (187)
T cd04132 62 YDRLRPLS---YPDVDVLLICYAVDN 84 (187)
T ss_pred CCCCHHHH---HHHCCEEEEEECCCC
T ss_conf 05343445---300348889503687