HHsearch alignment for GI: 254780226 and conserved domain: cd04136
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.99 E-value=0.00013 Score=50.76 Aligned_cols=147 Identities=18% Similarity=0.250 Sum_probs=83.7
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337-99768555877764218650233579998512235432
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG-EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g-~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
T Consensus 2 fKivllGd~~VGKTsli~r~~~~-~-f~~~y~-~Ti~~~~~k~i~------------~~~~---~~~l~iwDtaG~e~-- 61 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQG-I-FVEKYD-PTIEDSYRKQIE------------VDGQ---QCMLEILDTAGTEQ-- 61 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCCEEEEEEE------------ECCE---EEEEEECCCCCCHH--
T ss_conf 19999899998899999999719-5-988669-954206999999------------9999---99998645765445--
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
T Consensus 62 --~~~~~~---~y~~~a~~~ilvydvt~~~S-------------f~------------~l~~-~---------------- 94 (163)
T cd04136 62 --FTAMRD---LYIKNGQGFVLVYSITSQSS-------------FN------------DLQD-L---------------- 94 (163)
T ss_pred --HHHHHH---HHHCCCCEEEEEECCCCHHH-------------HH------------HHHH-H----------------
T ss_conf --556789---88346876999704898899-------------99------------9999-9----------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
T Consensus 95 ------------------------~~-~i~~-~~~---~~~~piilVGnK~Dl~~~r-~v~~~~~~~~a~~~~~~~~E~S 144 (163)
T cd04136 95 ------------------------RE-QILR-VKD---TENVPMVLVGNKCDLEDER-VVSREEGQALARQWGCPFYETS 144 (163)
T ss_pred ------------------------HH-HHHH-HCC---CCCCCEEEEECCCCHHHHC-CCCHHHHHHHHHHCCCEEEEEC
T ss_conf ------------------------99-9998-618---8888678762354726407-8999999999998499899974
Q ss_pred CHHHH
Q ss_conf 00246
Q gi|254780226|r 242 AAIEA 246 (367)
Q Consensus 242 a~~E~ 246 (367)
T Consensus 145 Ak~~~ 149 (163)
T cd04136 145 AKSKI 149 (163)
T ss_pred CCCCC
T ss_conf 48780