HHsearch alignment for GI: 254780226 and conserved domain: cd04137

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.07  E-value=0.00024  Score=49.01  Aligned_cols=148  Identities=21%  Similarity=0.240  Sum_probs=84.4

Q ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf             4867528887888999987404898736668674488337-997685558777642186502335799985122354322
Q gi|254780226|r    4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG-EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS   82 (367)
Q Consensus         4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g-~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~   82 (367)
T Consensus         3 KIvlvGd~~VGKTsli~r~~~~~--f~~~y~-~Ti~~~~~k~i~------------~~~~---~~~l~iwDtaG~e~---   61 (180)
T cd04137           3 KIAVLGSRSVGKSSLTVQFVEGH--FVESYY-PTIENTFSKIIR------------YKGQ---DYHLEIVDTAGQDE---   61 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC--CCCCCC-CCCCCCCCEEEE------------ECCE---EEEEEEEECCCCCC---
T ss_conf             89999989988999999997097--899858-812441137999------------9999---99999998998701---


Q ss_pred             CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             24663289999873037478850123454211345776732157889888876433222457777787520320467778
Q gi|254780226|r   83 KGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLL  162 (367)
Q Consensus        83 ~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~~  162 (367)
T Consensus        62 -~~~~~~---~~~~~a~~~ilvydvt~~~S-------------f------------~~~~~~~~~~~-------------   99 (180)
T cd04137          62 -YSILPQ---KYSIGIHGYILVYSVTSRKS-------------F------------EVVKVIYDKIL-------------   99 (180)
T ss_pred             -CCHHHH---HHHHHCCEEEEEEECCCHHH-------------H------------HHHHHHHHHHH-------------
T ss_conf             -006679---99863557899974388788-------------9------------99999999999-------------


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99999889988758741034431326777621023576410100100343011101013467877886436984033210
Q gi|254780226|r  163 QSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIISA  242 (367)
Q Consensus       163 ~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~isa  242 (367)
T Consensus       100 -----------------------------~~~~~----~~~piilVgNK~DL~~~r-~V~~~e~~~~a~~~~~~f~EtSA  145 (180)
T cd04137         100 -----------------------------DMLGK----ESVPIVLVGNKSDLHTQR-QVSTEEGKELAESWGAAFLESSA  145 (180)
T ss_pred             -----------------------------HHHCC----CCCCEEEEEECCCCHHHC-CCCHHHHHHHHHHCCCEEEEECC
T ss_conf             -----------------------------97588----888679776534624407-88999999999983998999776


Q ss_pred             HHHHHH
Q ss_conf             024665
Q gi|254780226|r  243 AIEAEI  248 (367)
Q Consensus       243 ~~E~ei  248 (367)
T Consensus       146 k~g~nV  151 (180)
T cd04137         146 RENENV  151 (180)
T ss_pred             CCCCCH
T ss_conf             889198