HHsearch alignment for GI: 254780226 and conserved domain: cd04140
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.11 E-value=7.5e-05 Score=52.48 Aligned_cols=149 Identities=19% Similarity=0.273 Sum_probs=84.8
Q ss_pred CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEE-EEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 24867528887888999987404898736668674488337-99768555877764218650233579998512235432
Q gi|254780226|r 3 FKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSG-EVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 3 ~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g-~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
T Consensus 2 ~KivllGd~~VGKTsli~r~~~~-~-F~~~y~-~Ti~~~~~~~i~~------------~~-~--~~~l~iwDtaG~e--- 60 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKG-T-FRESYI-PTIEDTYRQVISC------------SK-N--ICTLQITDTTGSH--- 60 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC-C-CCCCCC-CCCCCEEEEEEEE------------CC-E--EEEEEEEECCCCC---
T ss_conf 09999899997699999999649-6-999868-8454205589999------------99-9--9999999899984---
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
T Consensus 61 -~~~~l~~~---~~~~a~~~ilvydit~~~S----------f---------------~~~~~~~~~i~~----------- 100 (165)
T cd04140 61 -QFPAMQRL---SISKGHAFILVYSVTSKQS----------L---------------EELKPIYELICE----------- 100 (165)
T ss_pred -CCCCCHHH---HHCCCCEEEEEECCCCHHH----------H---------------HHHHHHHHHHHH-----------
T ss_conf -65423244---5068857999813898789----------9---------------999999999999-----------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
T Consensus 101 --------------------------------~~~~~-~~~~piilVgNK~Dl~~~r-~V~~~e~~~~a~~~~~~~~E~S 146 (165)
T cd04140 101 --------------------------------IKGNN-IEKIPIMLVGNKCDESHKR-EVSSNEGAACATEWNCAFMETS 146 (165)
T ss_pred --------------------------------HHHCC-CCCCCEEEEEECCCCCCCC-CCCHHHHHHHHHHCCCEEEEEC
T ss_conf --------------------------------96158-8888789986424640027-8899999999998698899974
Q ss_pred CHHHH
Q ss_conf 00246
Q gi|254780226|r 242 AAIEA 246 (367)
Q Consensus 242 a~~E~ 246 (367)
T Consensus 147 Ak~~~ 151 (165)
T cd04140 147 AKTNH 151 (165)
T ss_pred CCCCC
T ss_conf 47794