HHsearch alignment for GI: 254780226 and conserved domain: cd04145
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.99 E-value=0.00018 Score=49.91 Aligned_cols=149 Identities=16% Similarity=0.226 Sum_probs=85.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCC
Q ss_conf 82486752888788899998740489873666867448833799768555877764218650233579998512235432
Q gi|254780226|r 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGA 81 (367)
Q Consensus 2 ~~kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA 81 (367)
T Consensus 2 t~Kiv~lGd~~VGKTsli~r~~~~-~-f~~~y~-----~Ti~~~~~k~~-------~~~~~---~~~l~iwDtaG~e~-- 62 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQS-Y-FVTDYD-----PTIEDSYTKQC-------EIDGQ---WAILDILDTAGQEE-- 62 (164)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCC-C-CCCCCC-----CCEEEEEEEEE-------EECCE---EEEEEEEECCCCCC--
T ss_conf 379999999997889999999809-8-987567-----84135899999-------99999---99999998988603--
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 22466328999987303747885012345421134577673215788988887643322245777778752032046777
Q gi|254780226|r 82 SKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRIDPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVL 161 (367)
Q Consensus 82 ~~G~GlGN~FL~~ir~aDalihVVdaf~~~~v~~~~g~~DP~~Di~~i~~EL~l~dle~lek~~~k~~k~~~~~~~~~~~ 161 (367)
T Consensus 63 --~~~~~~---~~~~~a~~~ilvydi~~~~-------S---f~~---------------~~~~~~~i------------- 99 (164)
T cd04145 63 --FSAMRE---QYMRTGEGFLLVFSVTDRG-------S---FEE---------------VDKFHTQI------------- 99 (164)
T ss_pred --CCHHHH---HHHCCCCCCEEEEECCCHH-------H---HHH---------------HHHHHHHH-------------
T ss_conf --125679---8734678746898567354-------3---999---------------99999999-------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCHHEECCCHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89999988998875874103443132677762102357641010010034301110101346787788643698403321
Q gi|254780226|r 162 LQSIISSSLRLIEEGKPVRSLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIIIS 241 (367)
Q Consensus 162 ~~~~l~~~~~~Le~~~~~r~~~~~~~~de~~~l~~~~llt~KP~iivaNk~e~~~~~~n~~~e~i~~l~~~~~~~~i~is 241 (367)
T Consensus 100 -----------~~-------~------------~~---~~~~piilVgNK~DL~~~-r~Vs~~e~~~~a~~~~~~~~E~S 145 (164)
T cd04145 100 -----------LR-------V------------KD---RDEFPMILVGNKADLEHQ-RKVSREEGQELARKLKIPYIETS 145 (164)
T ss_pred -----------HH-------H------------CC---CCCCCEEEECCCCCHHHH-CCCCHHHHHHHHHHCCCEEEEEC
T ss_conf -----------98-------6------------18---877752653034573540-88999999999998199899985
Q ss_pred CHHHH
Q ss_conf 00246
Q gi|254780226|r 242 AAIEA 246 (367)
Q Consensus 242 a~~E~ 246 (367)
T Consensus 146 Ak~~~ 150 (164)
T cd04145 146 AKDRL 150 (164)
T ss_pred CCCCC
T ss_conf 48682