HHsearch alignment for GI: 254780226 and conserved domain: cd04147
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.99 E-value=0.00016 Score=50.30 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=50.3
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCE-EEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCC
Q ss_conf 486752888788899998740489873666867448833-7997685558777642186502335799985122354322
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNS-GEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGAS 82 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~-g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~ 82 (367)
T Consensus 1 KIvvlGd~~VGKTSLi~rf~~~--~F~~~y~-~Ti~~~~~k~~~v------------~~---~~v~l~i~DtaG~----e 58 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYD--TFEPKYR-RTVEEMHRKEYEV------------GG---VSLTLDILDTSGS----Y 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHC--CCCCCCC-CCHHHEEEEEEEE------------CC---EEEEEEEEECCCC----C
T ss_conf 9899998997799999999859--8998888-8725418899998------------99---7999999978775----1
Q ss_pred CCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 24663289999873037478850123
Q gi|254780226|r 83 KGEGLGNQFLAHIREVDAIIHVLRCF 108 (367)
Q Consensus 83 ~G~GlGN~FL~~ir~aDalihVVdaf 108 (367)
T Consensus 59 ~~~~l---~~~~~r~a~~~ilVyDit 81 (198)
T cd04147 59 SFPAM---RKLSIQNSDAFALVYAVD 81 (198)
T ss_pred CCHHH---HHHHCCCCCEEEEEEECC
T ss_conf 30145---555415886689996169