HHsearch alignment for GI: 254780226 and conserved domain: cd04158
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.71 E-value=5.6e-07 Score=66.80 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=52.0
Q ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 48675288878889999874048987366686744883379976855587776421865023357999851223543222
Q gi|254780226|r 4 KCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLVPTRMSFVDIAGLVRGASK 83 (367)
Q Consensus 4 kiGlvG~pn~GKST~f~alT~~~~~~~~~ypFtTi~pn~g~~~v~d~~~~~l~~~~~~~~~~p~~i~~iDvaGLv~gA~~ 83 (367)
T Consensus 1 KIlilGl~~sGKTtil~~l~~~-~~--~-~~~pT~G~~~~~i~~~-----------------~~~l~iwD~gG----~~~ 55 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQD-EF--M-QPIPTIGFNVETVEYK-----------------NLKFTIWDVGG----KHK 55 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHCC-CC--C-CCCCCCCCCEEEEEEC-----------------CEEEEEEECCC----CCC
T ss_conf 9999998999889999999579-96--8-9778688166999989-----------------88999998999----724
Q ss_pred CCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 46632899998730374788501234
Q gi|254780226|r 84 GEGLGNQFLAHIREVDAIIHVLRCFK 109 (367)
Q Consensus 84 G~GlGN~FL~~ir~aDalihVVdaf~ 109 (367)
T Consensus 56 ~r~~w~~Y---y~~~~~iIfVvDssd 78 (169)
T cd04158 56 LRPLWKHY---YLNTQAVVFVVDSSH 78 (169)
T ss_pred CCHHHHHH---CCCCCEEEEEEECCH
T ss_conf 46367875---557627999998630